Detailed information NTG0652366

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OG960_RS16270
• Genome accession: NZ_CP108059
• Coordinates: 3706914..3708200 (-)
• Length: 428 a.a.
• NCBI ID: WP_327694890.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00280
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3701914..3713200

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG960_RS16260 (OG960_16330)	-	3703088..3705712 (-)	2625	WP_371659959.1	valine--tRNA ligase	-
OG960_RS16265 (OG960_16335)	-	3705849..3706811 (+)	963	WP_371659960.1	hypothetical protein	-
OG960_RS16270 (OG960_16340)	clpX	3706914..3708200 (-)	1287	WP_327694890.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG960_RS16275 (OG960_16345)	clpP	3708384..3709082 (-)	699	WP_329276868.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG960_RS16280 (OG960_16350)	clpP	3709132..3709740 (-)	609	WP_189149023.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG960_RS16285 (OG960_16355)	tig	3710195..3711589 (-)	1395	WP_371659961.1	trigger factor	-
OG960_RS16300 (OG960_16370)	-	3712185..3712379 (-)	195	WP_006383514.1	hypothetical protein	-
OG960_RS16305 (OG960_16375)	-	3712584..3713057 (-)	474	WP_371659962.1	HD domain-containing protein	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46937.85 Da
• Isoelectric Point: 4.8346

>NTDB_id=652366 OG960_RS16270 WP_327694890.1 3706914..3708200(-) (clpX) [Streptomyces sp. NBC_00280]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQES
AKKALSVAVYNHYKRVQAGENSAGQNRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKLVESRAGAKGIGFGATIRSKKELEAKDRFEDVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQAVMYEVPSRKDVARVVIT
VDVVLKNVNPTLIPRDARGRGPGEQKTA

Nucleotide

• Length: 1287 bp

>NTDB_id=652366 OG960_RS16270 WP_327694890.1 3706914..3708200(-) (clpX) [Streptomyces sp. NBC_00280]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGTGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGCCCCGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAAGAACTCGCGGAGACGA
GTGAGGTCAGGTGGGAGGAACTCCCCAAGCCTCGCGAGATCTACGAGTTCCTCGAGGGGTACGTAGTCGGTCAGGAGTCG
GCCAAGAAGGCCCTGTCCGTCGCGGTGTACAACCACTACAAGCGGGTCCAGGCCGGTGAGAACAGCGCCGGGCAGAACCG
TGACGACGCCATCGAGTTGGCCAAGTCGAACATCCTTCTGCTGGGCCCCACGGGCTCCGGCAAGACCCTCCTCGCGCAGA
CCCTGGCGCGCATGCTGAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCCGGGTATGTCGGCGAGGAC
GTCGAGAACATCCTGTTGAAGCTGATCCAGGCGGCGGACTACGACGTCAAGAAGGCCGAAACCGGAATCATCTACATCGA
CGAGATCGACAAGGTCGCGCGTAAGAGTGAAAACCCGTCGATCACGCGTGACGTGTCCGGCGAGGGTGTCCAGCAGGCCC
TGTTGAAGATCCTCGAAGGCACGACGGCCTCCGTCCCGCCGCAGGGCGGACGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGCGGTGCCTTCGCGGGCCTGGAGAAGCTCGTCGAGTCCCGTGCGGGCGC
CAAGGGCATCGGCTTCGGCGCCACGATCCGTTCCAAGAAGGAACTGGAGGCGAAGGACCGCTTCGAGGACGTCATGCCCG
AGGACCTGGTGAAGTTCGGCATGATCCCCGAGTTCATCGGCCGTCTCCCGGTCATCACGTCGGTCCACAACCTCGACCGC
GAGGCCCTTCTCCAGATCCTGGTGGAGCCGCGCAACGCCCTCGTCAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAGCTGGACTTCGAGCGCGAGGCCCTGGAGGCCATCGCCGACCAGGCGATCCTGCGCCAGACCGGCGCCCGCGGCCTGC
GCGCCATCATGGAGGAGGTCCTCCAGGCGGTGATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTCGTCATCACG
GTGGACGTCGTCCTGAAGAACGTGAACCCGACCCTGATCCCGAGGGACGCGCGCGGACGCGGCCCGGGCGAGCAGAAGAC
GGCGTAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-396)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.935	93.925	0.591
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.988	96.028	0.528