Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG960_RS16275 Genome accession   NZ_CP108059
Coordinates   3708384..3709082 (-) Length   232 a.a.
NCBI ID   WP_329276868.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00280     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3703384..3714082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG960_RS16265 (OG960_16335) - 3705849..3706811 (+) 963 WP_371659960.1 hypothetical protein -
  OG960_RS16270 (OG960_16340) clpX 3706914..3708200 (-) 1287 WP_327694890.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG960_RS16275 (OG960_16345) clpP 3708384..3709082 (-) 699 WP_329276868.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG960_RS16280 (OG960_16350) clpP 3709132..3709740 (-) 609 WP_189149023.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG960_RS16285 (OG960_16355) tig 3710195..3711589 (-) 1395 WP_371659961.1 trigger factor -
  OG960_RS16300 (OG960_16370) - 3712185..3712379 (-) 195 WP_006383514.1 hypothetical protein -
  OG960_RS16305 (OG960_16375) - 3712584..3713057 (-) 474 WP_371659962.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25565.99 Da        Isoelectric Point: 4.6426

>NTDB_id=652367 OG960_RS16275 WP_329276868.1 3708384..3709082(-) (clpP) [Streptomyces sp. NBC_00280]
MNDFPGSGLYDRTRAAQAAQAEYTGPAAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLC
LESMDPDRDISVYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETG
RGQVSDLEIAANEILRMRAQLEDMLARHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNASVR

Nucleotide


Download         Length: 699 bp        

>NTDB_id=652367 OG960_RS16275 WP_329276868.1 3708384..3709082(-) (clpP) [Streptomyces sp. NBC_00280]
GTGAACGACTTCCCCGGCAGCGGCCTCTACGACCGTACGAGGGCGGCCCAGGCCGCTCAGGCTGAGTACACCGGCCCCGC
CGCCGAATCCCGCTACGTCATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGC
TCTTCGAGGAGCGCGTGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGC
CTGGAGTCGATGGACCCCGACCGGGACATCTCGGTCTACATCAACAGCCCCGGTGGCTCCTTCACGGCTCTCACGGCCAT
TTACGACACGATGCAGTTCGTGAAGCCGGACGTCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGATCCTCC
TCGCGGCCGGTACGCCGGGCAAGCGCATGGCGCTGCCCAACGCGCGCGTGCTGATCCACCAGCCGTACAGCGAAACCGGT
CGCGGGCAGGTCTCCGACCTGGAGATCGCGGCCAACGAGATCCTCCGGATGCGTGCCCAGCTGGAGGACATGCTGGCCAG
GCACTCCACCACGCCGATCGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTGGCGT
ACGGCCTGATCGATCAGATCATTTCCACTCGGAAAATGAACAACGCCAGCGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(43-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

81.897

0.431
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

81.034

0.405
  clpP Streptococcus mutans UA159

45.729

85.776

0.392
  clpP Streptococcus thermophilus LMD-9

46.667

84.052

0.392
  clpP Streptococcus thermophilus LMG 18311

46.667

84.052

0.392
  clpP Streptococcus pyogenes JRS4

45.641

84.052

0.384
  clpP Streptococcus pyogenes MGAS315

45.641

84.052

0.384
  clpP Streptococcus pneumoniae TIGR4

44.898

84.483

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

44.898

84.483

0.379
  clpP Streptococcus pneumoniae Rx1

44.898

84.483

0.379
  clpP Streptococcus pneumoniae D39

44.898

84.483

0.379
  clpP Streptococcus pneumoniae R6

44.898

84.483

0.379
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.878

84.483

0.371