Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHT57_RS18305 Genome accession   NZ_CP108055
Coordinates   3958184..3958792 (-) Length   202 a.a.
NCBI ID   WP_328753236.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00285     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3953184..3963792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT57_RS18290 (OHT57_18305) - 3954904..3955911 (+) 1008 WP_328747495.1 hypothetical protein -
  OHT57_RS18295 (OHT57_18310) clpX 3955987..3957273 (-) 1287 WP_328747496.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHT57_RS18300 (OHT57_18315) clpP 3957434..3958114 (-) 681 WP_328747497.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHT57_RS18305 (OHT57_18320) clpP 3958184..3958792 (-) 609 WP_328753236.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHT57_RS18310 (OHT57_18325) tig 3959133..3960527 (-) 1395 WP_328747498.1 trigger factor -
  OHT57_RS18325 (OHT57_18340) - 3961177..3961482 (+) 306 WP_328747499.1 hypothetical protein -
  OHT57_RS18330 (OHT57_18345) - 3961648..3961842 (-) 195 WP_328747500.1 hypothetical protein -
  OHT57_RS18335 (OHT57_18350) - 3962208..3963332 (+) 1125 WP_328747501.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21203.05 Da        Isoelectric Point: 4.7892

>NTDB_id=652277 OHT57_RS18305 WP_328753236.1 3958184..3958792(-) (clpP) [Streptomyces sp. NBC_00285]
MPSAAGEPSIGGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLAAADPDKDINLYINSPGGSITAGMAIYDTMQ
FIKNDVMTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTV
EQVTRDSDRDRWFDPAEAKAYGLIDDVISTAAGIPGGGGTGA

Nucleotide


Download         Length: 609 bp        

>NTDB_id=652277 OHT57_RS18305 WP_328753236.1 3958184..3958792(-) (clpP) [Streptomyces sp. NBC_00285]
ATGCCCTCCGCCGCCGGCGAGCCCTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCAACGAGCGGAT
CATCTTCCTCGGCCAGCCGGTCGACGATGACATCGCAAACAAGATCACCGCGCAGTTGCTGCTCCTTGCCGCGGCCGATC
CCGACAAGGACATCAACCTCTACATCAACAGCCCGGGCGGTTCGATCACGGCCGGTATGGCGATCTACGACACCATGCAG
TTCATCAAGAACGACGTGATGACCATCGCGATGGGTCTGGCCGCCTCCATGGGGCAGTTCCTGCTCAGCGCGGGCACCCC
CGGAAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGTCTCGCGGGTTCCGCGTCGGACA
TCAAGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAACTCACGTCCCAGCACACGGGCCAGACGGTC
GAGCAGGTCACCCGTGACTCGGACCGCGACCGCTGGTTCGACCCCGCGGAGGCCAAGGCGTACGGCCTCATCGACGACGT
GATCAGCACGGCTGCCGGCATCCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

56.977

85.149

0.485
  clpP Lactococcus lactis subsp. cremoris KW2

51.351

91.584

0.47
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.351

91.584

0.47
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.811

91.584

0.465
  clpP Streptococcus mutans UA159

54.335

85.644

0.465
  clpP Streptococcus pyogenes MGAS315

51.724

86.139

0.446
  clpP Streptococcus pyogenes JRS4

51.724

86.139

0.446
  clpP Streptococcus thermophilus LMG 18311

50.575

86.139

0.436
  clpP Streptococcus thermophilus LMD-9

50.575

86.139

0.436
  clpP Streptococcus pneumoniae Rx1

50

86.139

0.431
  clpP Streptococcus pneumoniae D39

50

86.139

0.431
  clpP Streptococcus pneumoniae R6

50

86.139

0.431
  clpP Streptococcus pneumoniae TIGR4

50

86.139

0.431