Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHT57_RS18300 Genome accession   NZ_CP108055
Coordinates   3957434..3958114 (-) Length   226 a.a.
NCBI ID   WP_328747497.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00285     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3952434..3963114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT57_RS18290 (OHT57_18305) - 3954904..3955911 (+) 1008 WP_328747495.1 hypothetical protein -
  OHT57_RS18295 (OHT57_18310) clpX 3955987..3957273 (-) 1287 WP_328747496.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHT57_RS18300 (OHT57_18315) clpP 3957434..3958114 (-) 681 WP_328747497.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHT57_RS18305 (OHT57_18320) clpP 3958184..3958792 (-) 609 WP_328753236.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHT57_RS18310 (OHT57_18325) tig 3959133..3960527 (-) 1395 WP_328747498.1 trigger factor -
  OHT57_RS18325 (OHT57_18340) - 3961177..3961482 (+) 306 WP_328747499.1 hypothetical protein -
  OHT57_RS18330 (OHT57_18345) - 3961648..3961842 (-) 195 WP_328747500.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24977.40 Da        Isoelectric Point: 4.6364

>NTDB_id=652276 OHT57_RS18300 WP_328747497.1 3957434..3958114(-) (clpP) [Streptomyces sp. NBC_00285]
MNDFPGSGLYDRTRAEYAGPVAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDLLAKHSTTPIEKIREDIERDKILTADDALAYGLIDQIISTRKMNNATVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=652276 OHT57_RS18300 WP_328747497.1 3957434..3958114(-) (clpP) [Streptomyces sp. NBC_00285]
GTGAACGACTTCCCCGGCAGCGGCCTGTACGACCGCACACGCGCCGAGTACGCGGGACCCGTCGCCGAGTCCCGCTACGT
GATCCCCCGCTTCGTCGAGCGCACCTCGCAGGGCGTCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCCGGTGGCTCCTTCACGGCGCTCACTGCGATTTACGACACCATGCAGTT
CGTGAAGCCCGACGTCCAGACGGTCTGCATGGGCCAGGCCGCCTCGGCCGCCGCCATCCTGCTGGCCGCCGGCACACCGG
GCAAGCGCATGGCGCTCCCGAACGCCCGGGTGCTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGACAGGTCTCCGAC
CTGGAGATCGCCGCCAACGAGATCCTCCGGATGCGCGCCCAGCTGGAAGACCTGCTGGCCAAGCACTCCACGACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGACGACGCCCTGGCGTACGGCCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACGCCACCGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.532

83.186

0.42
  clpP Streptococcus mutans UA159

45.274

88.938

0.403
  clpP Streptococcus thermophilus LMD-9

46.667

86.283

0.403
  clpP Streptococcus thermophilus LMG 18311

46.667

86.283

0.403
  clpP Streptococcus pneumoniae D39

44.898

86.726

0.389
  clpP Streptococcus pneumoniae R6

44.898

86.726

0.389
  clpP Streptococcus pneumoniae TIGR4

44.898

86.726

0.389
  clpP Lactococcus lactis subsp. cremoris KW2

44.898

86.726

0.389
  clpP Streptococcus pneumoniae Rx1

44.898

86.726

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.878

86.726

0.381