Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   LVJ85_RS10585 Genome accession   NZ_CP091522
Coordinates   2150923..2152161 (-) Length   412 a.a.
NCBI ID   WP_244739790.1    Uniprot ID   -
Organism   Neisseria sp. Dent CA1/247     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2145923..2157161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ85_RS10555 (LVJ85_10555) ubiD 2146530..2148008 (-) 1479 WP_244739787.1 4-hydroxy-3-polyprenylbenzoate decarboxylase -
  LVJ85_RS10565 (LVJ85_10565) yacG 2148477..2148659 (-) 183 WP_085364438.1 DNA gyrase inhibitor YacG -
  LVJ85_RS10570 (LVJ85_10570) zapD 2148663..2149433 (-) 771 WP_244739788.1 cell division protein ZapD -
  LVJ85_RS10575 (LVJ85_10575) coaE 2149430..2150053 (-) 624 WP_244739789.1 dephospho-CoA kinase -
  LVJ85_RS10580 (LVJ85_10580) pilD 2150057..2150923 (-) 867 WP_370686917.1 A24 family peptidase Machinery gene
  LVJ85_RS10585 (LVJ85_10585) pilG 2150923..2152161 (-) 1239 WP_244739790.1 type II secretion system F family protein Machinery gene
  LVJ85_RS10590 (LVJ85_10590) pilF 2152194..2153873 (-) 1680 WP_244739791.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LVJ85_RS10600 (LVJ85_10600) - 2154941..2155573 (+) 633 WP_244739792.1 isochorismatase family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45429.56 Da        Isoelectric Point: 10.0019

>NTDB_id=652068 LVJ85_RS10585 WP_244739790.1 2150923..2152161(-) (pilG) [Neisseria sp. Dent CA1/247]
MSSSRIGNRNTKKEKGIRFNFEGRNIDTEQMVRGEVVAKNEEEARKKLQRRGIKPLRVSKVKAVRKKRITQEDITVFTRQ
LATMMKAGLPLMQAFEIVAKGHSNPSMTQMLMQVRADVEQGSALGKAFAKHPKYFDRFYCNLIAAGETGGVLESLLDKLA
VYKEKTQAIKKKVKSALTYPIAIVVVAVVLVFIMMVFVLPAFGEVYSSMGAELPGLTQIVMSISDFFVKYAWVIVIGTVA
LCFGVYQWYKKSPVLQKRVDAMMLRLPIFGSIVRKATIARWARTTSTLFAAGVPLVEVLDSVSGAAGNILYEEATHDIRA
KVTQGLSLTSSMQGTDMFPNMVLQMAAIGEESGSLDDMLNKAAEFYEDEVDNAVAQLSSLMEPIIMVVLGSIIGIILVAM
YLPLFNLGNVVG

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=652068 LVJ85_RS10585 WP_244739790.1 2150923..2152161(-) (pilG) [Neisseria sp. Dent CA1/247]
ATGAGCAGTTCCAGAATAGGAAATAGAAACACTAAAAAAGAAAAAGGTATACGTTTTAACTTTGAAGGCAGAAATATTGA
CACCGAACAAATGGTTCGGGGGGAAGTGGTTGCCAAAAACGAGGAAGAGGCCCGTAAAAAGCTTCAACGCCGCGGTATCA
AACCGCTTCGTGTCAGCAAAGTTAAAGCCGTACGCAAGAAAAGAATTACTCAGGAAGACATCACAGTATTCACCCGCCAA
CTGGCAACCATGATGAAAGCCGGTTTGCCTTTGATGCAGGCATTTGAAATCGTGGCCAAAGGCCACTCAAATCCGTCGAT
GACGCAAATGCTGATGCAAGTGCGCGCCGATGTGGAGCAGGGCAGTGCGCTAGGTAAAGCGTTTGCCAAACATCCCAAAT
ATTTCGACCGTTTCTACTGCAACCTGATTGCAGCGGGCGAAACCGGCGGTGTGTTGGAAAGCCTGCTCGACAAATTGGCT
GTTTATAAAGAAAAAACCCAAGCAATTAAGAAAAAGGTTAAAAGTGCGCTGACTTATCCGATTGCGATCGTTGTCGTTGC
CGTTGTATTGGTTTTCATTATGATGGTGTTCGTACTGCCGGCTTTTGGTGAAGTGTACAGCAGCATGGGTGCAGAGCTGC
CGGGGTTGACTCAAATTGTGATGAGTATTTCCGACTTCTTTGTTAAATATGCGTGGGTTATTGTGATCGGAACGGTAGCA
CTGTGTTTTGGTGTTTACCAGTGGTACAAAAAATCACCAGTGTTGCAAAAACGTGTTGATGCCATGATGCTCAGATTGCC
TATTTTCGGTTCGATTGTCAGAAAAGCGACCATCGCACGTTGGGCACGTACAACTTCTACTCTGTTTGCAGCCGGTGTGC
CTTTAGTGGAAGTGTTGGATTCCGTATCAGGCGCGGCGGGCAATATCCTTTATGAAGAAGCTACCCATGATATTCGAGCC
AAAGTTACCCAAGGTTTGTCATTGACATCCAGCATGCAGGGCACAGATATGTTCCCCAATATGGTGTTGCAAATGGCCGC
TATCGGTGAAGAATCAGGTTCGTTGGATGATATGTTGAATAAGGCCGCAGAGTTTTATGAAGACGAAGTGGATAATGCCG
TAGCGCAGCTTTCATCATTGATGGAGCCGATTATTATGGTTGTGCTGGGTTCCATCATCGGCATTATCTTGGTCGCCATG
TATCTGCCGTTGTTCAACTTGGGTAACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

70.471

97.816

0.689
  pilG Neisseria meningitidis 44/76-A

69.975

97.816

0.684
  pilC Legionella pneumophila strain ERS1305867

47.761

97.573

0.466
  pilC Acinetobacter baumannii D1279779

44.862

96.845

0.434
  pilC Acinetobacter baylyi ADP1

44.612

96.845

0.432
  pilC Pseudomonas stutzeri DSM 10701

44.836

96.359

0.432
  pilC Vibrio cholerae strain A1552

38.693

96.602

0.374
  pilC Vibrio campbellii strain DS40M4

37.688

96.602

0.364