Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   OHT76_RS08000 Genome accession   NZ_CP108053
Coordinates   1768375..1769445 (-) Length   356 a.a.
NCBI ID   WP_328870047.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00287     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1763375..1774445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT76_RS07980 (OHT76_08005) - 1764156..1764695 (-) 540 WP_328870043.1 adenine phosphoribosyltransferase -
  OHT76_RS07985 (OHT76_08010) secF 1764692..1765810 (-) 1119 WP_328870044.1 protein translocase subunit SecF -
  OHT76_RS07990 (OHT76_08015) secD 1765812..1767566 (-) 1755 WP_328870045.1 protein translocase subunit SecD -
  OHT76_RS07995 (OHT76_08020) yajC 1767698..1768189 (-) 492 WP_328870046.1 preprotein translocase subunit YajC -
  OHT76_RS08000 (OHT76_08025) ruvB 1768375..1769445 (-) 1071 WP_328870047.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  OHT76_RS08005 (OHT76_08030) ruvA 1769467..1770072 (-) 606 WP_328870048.1 Holliday junction branch migration protein RuvA -
  OHT76_RS08010 (OHT76_08035) ruvC 1770069..1770614 (-) 546 WP_328870049.1 crossover junction endodeoxyribonuclease RuvC -
  OHT76_RS08015 (OHT76_08040) - 1770725..1771477 (-) 753 WP_328870050.1 YebC/PmpR family DNA-binding transcriptional regulator -
  OHT76_RS08020 (OHT76_08045) pdxT 1771526..1772131 (-) 606 WP_328870051.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  OHT76_RS08025 (OHT76_08050) pdxS 1772131..1773036 (-) 906 WP_328870052.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  OHT76_RS08030 (OHT76_08055) - 1773154..1773696 (-) 543 WP_328870053.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38203.56 Da        Isoelectric Point: 4.8394

>NTDB_id=652067 OHT76_RS08000 WP_328870047.1 1768375..1769445(-) (ruvB) [Streptomyces sp. NBC_00287]
MNWDDTTDTPAEERLVGASADRDDQAVEAALRPKDLDEFIGQEKVREQLDLVLRAARARGATADHVLLSGAPGLGKTTLS
MIIAAEMDAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIPLEL
PPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYEPTELERVVHRSAHLLDVEIDPAGAAEIAGRSRGTPRIANRLLRRVRD
YAQVKADGIVTREIAAAALKVYEVDARGLDRLDRAVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLA
RTPRGRVATPAAWAHLGLTPPRSGAAGNGQGDLFGT

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=652067 OHT76_RS08000 WP_328870047.1 1768375..1769445(-) (ruvB) [Streptomyces sp. NBC_00287]
GTGAACTGGGACGACACGACCGACACCCCCGCCGAAGAGCGGCTCGTCGGTGCGTCCGCCGACCGTGACGACCAGGCCGT
CGAAGCGGCGCTGCGCCCCAAGGACCTGGACGAGTTCATCGGCCAGGAGAAGGTCCGCGAACAGCTCGACCTCGTCCTGC
GCGCCGCACGCGCGCGTGGCGCCACCGCCGACCACGTCCTGCTCTCCGGCGCCCCCGGCCTCGGCAAGACCACCCTGTCG
ATGATCATCGCGGCCGAGATGGACGCCCCGATCCGCATCACCTCCGGGCCCGCCATCCAGCACGCCGGCGACCTCGCGGC
GATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGTCCCGGCCCGCCGAGGAGATGC
TCTACATGGCGATGGAGGACTTCCGCGTCGACGTGATCGTCGGCAAGGGCCCCGGCGCCACCGCCATCCCCCTTGAGCTG
CCGCCCTTCACCCTGGTCGGCGCCACCACACGCGCGGGACTGCTGCCGCCCCCGCTGCGCGACCGCTTCGGCTTCACCGC
GCACATGGAGTTCTACGAGCCCACCGAGCTGGAGCGCGTCGTCCACCGCTCCGCGCATCTCCTCGACGTCGAGATCGACC
CGGCCGGCGCCGCCGAGATCGCCGGCCGCTCCCGCGGCACGCCCCGCATCGCCAACCGTCTGCTGCGCCGAGTACGGGAC
TATGCGCAGGTCAAGGCCGACGGCATCGTCACGCGCGAGATCGCGGCGGCGGCACTGAAGGTCTACGAGGTCGACGCCCG
TGGCCTCGACCGTCTCGACCGCGCCGTACTCGAAGCGCTGCTCAAGCTGTTCGGCGGCGGCCCCGTCGGCCTGTCCACCC
TCGCGGTCGCGGTGGGGGAGGAGCGCGAGACGGTGGAGGAAGTCGCCGAGCCCTTCCTGGTGCGGGAGGGTCTGCTGGCC
CGCACTCCCCGCGGCCGGGTGGCCACGCCCGCGGCATGGGCGCATCTCGGCCTCACCCCGCCGCGCTCGGGGGCTGCCGG
AAACGGACAAGGGGACCTGTTCGGGACGTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(192-265)

RuvB C-terminal winged helix domain (WHD_RuvB)

(267-336)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(31-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

54.381

92.978

0.506
  ruvB Synechocystis sp. PCC 6803

53.822

88.202

0.475
  ruvB Streptococcus pneumoniae TIGR4

52.698

88.483

0.466
  ruvB Streptococcus pneumoniae R6

52.698

88.483

0.466
  ruvB Streptococcus pneumoniae D39

52.698

88.483

0.466
  ruvB Helicobacter pylori 26695

50.157

89.607

0.449