Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LVJ85_RS10580 Genome accession   NZ_CP091522
Coordinates   2150057..2150923 (-) Length   288 a.a.
NCBI ID   WP_370686917.1    Uniprot ID   -
Organism   Neisseria sp. Dent CA1/247     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2145057..2155923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ85_RS10550 (LVJ85_10550) - 2145129..2146205 (+) 1077 WP_244739786.1 ATP-binding protein -
  LVJ85_RS10555 (LVJ85_10555) ubiD 2146530..2148008 (-) 1479 WP_244739787.1 4-hydroxy-3-polyprenylbenzoate decarboxylase -
  LVJ85_RS10565 (LVJ85_10565) yacG 2148477..2148659 (-) 183 WP_085364438.1 DNA gyrase inhibitor YacG -
  LVJ85_RS10570 (LVJ85_10570) zapD 2148663..2149433 (-) 771 WP_244739788.1 cell division protein ZapD -
  LVJ85_RS10575 (LVJ85_10575) coaE 2149430..2150053 (-) 624 WP_244739789.1 dephospho-CoA kinase -
  LVJ85_RS10580 (LVJ85_10580) pilD 2150057..2150923 (-) 867 WP_370686917.1 A24 family peptidase Machinery gene
  LVJ85_RS10585 (LVJ85_10585) pilG 2150923..2152161 (-) 1239 WP_244739790.1 type II secretion system F family protein Machinery gene
  LVJ85_RS10590 (LVJ85_10590) pilF 2152194..2153873 (-) 1680 WP_244739791.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LVJ85_RS10600 (LVJ85_10600) - 2154941..2155573 (+) 633 WP_244739792.1 isochorismatase family protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31618.91 Da        Isoelectric Point: 7.9305

>NTDB_id=652067 LVJ85_RS10580 WP_370686917.1 2150057..2150923(-) (pilD) [Neisseria sp. Dent CA1/247]
MMWAIFQELAPFAVPLSLLFGLLVGSFLNVVIYRVPVMMERNWTLFAKDHLNLDISAEESASFNLIKPDSRCPKCHAPVK
PWQNIPIISYLLLGGKCGSCKTPISKRYPLVELLTGVLFAAVAWKYGWSWITFGGLIFTAMLVALAFIDADTQYLPDQLT
LPLIWLGLIFNIDGSFVPLTSAVWGAVCGYMSLWLLCYIYKILTGKIGMGGGDFKLLAALGAWLGVGVLPILVFMAALIG
IIVALIMRIAKGQEFAFGPSLAIAGWIIFIANEQVISLTSWWLTASGF

Nucleotide


Download         Length: 867 bp        

>NTDB_id=652067 LVJ85_RS10580 WP_370686917.1 2150057..2150923(-) (pilD) [Neisseria sp. Dent CA1/247]
ATGATGTGGGCTATATTTCAAGAGCTGGCACCTTTTGCGGTGCCGCTTTCGTTGTTGTTTGGTCTGTTGGTAGGCAGCTT
TTTGAATGTTGTTATTTACCGTGTTCCTGTAATGATGGAACGAAATTGGACGCTGTTTGCCAAAGACCATTTGAATTTGG
ACATCTCAGCTGAAGAATCTGCTTCGTTCAATTTAATCAAACCTGATTCCAGATGCCCTAAGTGCCATGCCCCTGTTAAA
CCGTGGCAAAACATCCCCATCATCAGCTATCTGCTGCTGGGAGGGAAATGTGGGTCTTGCAAAACACCGATTAGCAAACG
CTATCCTTTAGTTGAACTGTTAACGGGTGTATTGTTTGCAGCGGTTGCTTGGAAATATGGTTGGAGTTGGATTACCTTCG
GTGGTTTGATCTTTACGGCTATGCTGGTAGCACTGGCTTTTATTGATGCAGACACCCAATATCTGCCGGATCAATTGACT
TTGCCTCTGATATGGCTCGGGTTGATTTTTAATATAGACGGTTCGTTTGTGCCGCTGACTTCCGCAGTTTGGGGAGCGGT
TTGCGGTTATATGAGTTTATGGCTGCTGTGTTATATTTATAAAATCTTAACCGGCAAGATCGGTATGGGAGGCGGGGACT
TCAAATTATTGGCGGCCCTTGGTGCATGGTTGGGAGTAGGTGTGTTGCCTATATTGGTATTCATGGCCGCTTTAATCGGC
ATTATAGTGGCGCTGATTATGCGGATCGCCAAAGGGCAGGAGTTTGCATTTGGCCCCAGCTTGGCAATCGCCGGATGGAT
TATATTCATTGCCAACGAGCAGGTGATATCATTAACATCGTGGTGGTTAACTGCTTCAGGGTTTTAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(19-126)

Type IV leader peptidase family (Peptidase_A24)

(137-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

71.014

95.833

0.681
  pilD Vibrio cholerae strain A1552

47.81

95.139

0.455
  pilD Vibrio campbellii strain DS40M4

44.056

99.306

0.438
  pilD Acinetobacter nosocomialis M2

47.328

90.972

0.431
  pilD Acinetobacter baumannii D1279779

46.947

90.972

0.427