Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG985_RS30450 Genome accession   NZ_CP108046
Coordinates   6712621..6713301 (+) Length   226 a.a.
NCBI ID   WP_371671547.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00289     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6707621..6718301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG985_RS30425 (OG985_30315) - 6709219..6709413 (+) 195 WP_371671544.1 hypothetical protein -
  OG985_RS30440 (OG985_30330) tig 6710156..6711559 (+) 1404 WP_371671545.1 trigger factor -
  OG985_RS30445 (OG985_30335) clpP 6711929..6712549 (+) 621 WP_371671546.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG985_RS30450 (OG985_30340) clpP 6712621..6713301 (+) 681 WP_371671547.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG985_RS30455 (OG985_30345) clpX 6713474..6714763 (+) 1290 WP_371671548.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG985_RS30460 (OG985_30350) - 6714827..6715768 (-) 942 WP_371671549.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25000.36 Da        Isoelectric Point: 4.5102

>NTDB_id=652024 OG985_RS30450 WP_371671547.1 6712621..6713301(+) (clpP) [Streptomyces sp. NBC_00289]
MNDFPGSGLYDRSRAEYTGPSAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAEHSTTPIEKIREDIERDKILTAEEALSYGLIDQIISTRKMNNAAVK

Nucleotide


Download         Length: 681 bp        

>NTDB_id=652024 OG985_RS30450 WP_371671547.1 6712621..6713301(+) (clpP) [Streptomyces sp. NBC_00289]
GTGAACGACTTCCCCGGCAGCGGCCTGTACGACCGCTCACGCGCCGAGTACACGGGCCCCTCGGCGGAGTCCCGTTACGT
CATCCCGCGCTTCGTCGAACGCACCTCGCAGGGCGTCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGGGTGA
TCTTCCTCGGCGTCCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGATCCTGCTGGCCGCCGGTACGCCCG
GCAAGCGCATGGCGCTGCCGAACGCCCGGGTGCTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGTCAGGTCTCCGAC
CTGGAGATCGCCGCCAACGAGATCCTCCGGATGCGCGCGCAGCTCGAGGACATGCTGGCCGAGCACTCCACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGAAGCGCTGTCGTACGGCCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACGCCGCCGTGAAGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.158

84.071

0.447
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus mutans UA159

45.729

88.053

0.403
  clpP Streptococcus thermophilus LMD-9

46.667

86.283

0.403
  clpP Streptococcus thermophilus LMG 18311

46.667

86.283

0.403
  clpP Streptococcus pneumoniae D39

45.408

86.726

0.394
  clpP Streptococcus pneumoniae R6

45.408

86.726

0.394
  clpP Streptococcus pneumoniae TIGR4

45.408

86.726

0.394
  clpP Streptococcus pneumoniae Rx1

45.408

86.726

0.394
  clpP Lactococcus lactis subsp. cremoris KW2

44.898

86.726

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.878

86.726

0.381