Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG985_RS30445 Genome accession   NZ_CP108046
Coordinates   6711929..6712549 (+) Length   206 a.a.
NCBI ID   WP_371671546.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00289     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6706929..6717549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG985_RS30420 (OG985_30310) - 6707408..6708628 (-) 1221 WP_371671543.1 acyltransferase family protein -
  OG985_RS30425 (OG985_30315) - 6709219..6709413 (+) 195 WP_371671544.1 hypothetical protein -
  OG985_RS30440 (OG985_30330) tig 6710156..6711559 (+) 1404 WP_371671545.1 trigger factor -
  OG985_RS30445 (OG985_30335) clpP 6711929..6712549 (+) 621 WP_371671546.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG985_RS30450 (OG985_30340) clpP 6712621..6713301 (+) 681 WP_371671547.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG985_RS30455 (OG985_30345) clpX 6713474..6714763 (+) 1290 WP_371671548.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG985_RS30460 (OG985_30350) - 6714827..6715768 (-) 942 WP_371671549.1 hypothetical protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 21883.79 Da        Isoelectric Point: 4.6031

>NTDB_id=652023 OG985_RS30445 WP_371671546.1 6711929..6712549(+) (clpP) [Streptomyces sp. NBC_00289]
MTNLMPSAAGDPSIGGGLGDQVYNRLLNERIIFLGQAVDDDIANKITAQLLLLAAADPDKDINLYINSPGGSITAGMAIY
DTMQFIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTAEHT
GQTFEQVTRDSDRDRWFDPEEAKEYGLIDDVITRAANMPGGGGTGA

Nucleotide


Download         Length: 621 bp        

>NTDB_id=652023 OG985_RS30445 WP_371671546.1 6711929..6712549(+) (clpP) [Streptomyces sp. NBC_00289]
GTGACGAATCTGATGCCCTCCGCCGCCGGCGACCCCTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCT
CAACGAGCGGATCATCTTCCTCGGCCAGGCGGTCGACGACGACATCGCGAACAAGATCACCGCACAGCTGCTGCTCCTTG
CCGCTGCGGACCCCGACAAGGACATCAACCTCTACATCAACAGCCCGGGCGGCTCGATCACGGCCGGCATGGCGATCTAC
GACACCATGCAGTTCATCAAGAACGACGTGGTGACCATCGCCATGGGCCTCGCCGCCTCGATGGGGCAGTTCCTGCTCAG
CGCGGGTACGCCCGGCAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCGGGCCTGGCGGGCT
CGGCCTCCGACATCAAGATCCACGCCGAGCGACTGCTGCACACCAAGAAGCGCATGGCGGAGCTCACGGCCGAGCACACC
GGTCAGACGTTCGAGCAGGTCACCCGCGACTCCGACCGCGACCGCTGGTTCGACCCCGAGGAGGCCAAGGAGTACGGCCT
CATCGACGACGTCATCACGCGGGCCGCCAACATGCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

57.068

92.718

0.529
  clpP Lactococcus lactis subsp. cremoris KW2

51.031

94.175

0.481
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.515

94.175

0.476
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.448

84.466

0.451
  clpP Streptococcus mutans UA159

53.179

83.981

0.447
  clpP Streptococcus thermophilus LMD-9

51.724

84.466

0.437
  clpP Streptococcus thermophilus LMG 18311

51.724

84.466

0.437
  clpP Streptococcus pyogenes JRS4

51.445

83.981

0.432
  clpP Streptococcus pyogenes MGAS315

51.445

83.981

0.432
  clpP Streptococcus pneumoniae Rx1

51.445

83.981

0.432
  clpP Streptococcus pneumoniae D39

51.445

83.981

0.432
  clpP Streptococcus pneumoniae R6

51.445

83.981

0.432
  clpP Streptococcus pneumoniae TIGR4

51.445

83.981

0.432