Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LVJ77_RS00380 Genome accession   NZ_CP091521
Coordinates   85494..87020 (+) Length   508 a.a.
NCBI ID   WP_027008650.1    Uniprot ID   A0A8T9MXR0
Organism   Conchiformibius kuhniae strain 17694     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 80494..92020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ77_RS00365 (LVJ77_03285) - 80496..81464 (+) 969 WP_051255493.1 DNA-processing protein DprA -
  LVJ77_RS00370 (LVJ77_03280) parC 81580..83871 (+) 2292 WP_034334102.1 DNA topoisomerase IV subunit A -
  LVJ77_RS00375 (LVJ77_11970) - 83878..85497 (+) 1620 WP_027008649.1 ATP-binding protein -
  LVJ77_RS00380 (LVJ77_03260) pilR 85494..87020 (+) 1527 WP_027008650.1 sigma-54 dependent transcriptional regulator Regulator
  LVJ77_RS00385 (LVJ77_03255) - 87148..87921 (+) 774 WP_051255494.1 transporter substrate-binding domain-containing protein -
  LVJ77_RS00390 (LVJ77_11975) purB 87951..89321 (+) 1371 WP_027008651.1 adenylosuccinate lyase -
  LVJ77_RS00395 (LVJ77_03240) purM 89428..90462 (+) 1035 WP_027008652.1 phosphoribosylformylglycinamidine cyclo-ligase -
  LVJ77_RS00400 (LVJ77_03235) - 90651..91109 (+) 459 WP_034334180.1 hypothetical protein -
  LVJ77_RS00405 (LVJ77_03230) - 91106..91615 (+) 510 WP_027008653.1 DUF2199 domain-containing protein -
  LVJ77_RS00410 (LVJ77_03225) - 91684..92019 (+) 336 WP_027008654.1 YbaB/EbfC family nucleoid-associated protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 56368.31 Da        Isoelectric Point: 6.0668

>NTDB_id=652025 LVJ77_RS00380 WP_027008650.1 85494..87020(+) (pilR) [Conchiformibius kuhniae strain 17694]
MTRHSLNRPVLVVDDEADIRDLMEMTLMKMGLDVDTAEGVAIAKKKLDENKYSLVLTDMRMPDGSGLEVVEHITEGGHDT
PVAVITAFGNADQAVQALKIGAFDYLQKPITLAQLRTLVKSAVRVQDENNRPLAAAPAPPPVADAPPPRQAAAPSAPPVF
SEQSRIDVFVEPAADAAAHGLKHEYDIPRILGKSQQIEEARRLIRKLAQTQVPVYISGESGSGKEQAARSIHELSERRDK
PFIAVNCGAIPENLMESEFFGYKKGSFTGADQDRLGFFQHAHGGTLFLDEVADLPLAMQVKLLRAIQEKTVRRIGDAQEV
KVDVRIVSATHKNLAALVQEGSFRQDLFYRLNVVSLHMPPLREMHEDLEQLIVYLLKKHHGGQGVKMTAAARDALLHYNY
PGNFRELENILERAVALAANNVIDVEDLQIHSEPVSLAGEHIIAEEPNAALPGFQMGHTQLQDYLDDVERQILQQALTYT
RYNRTQAAKVLGISFRSMRYRLDRLSIE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=652025 LVJ77_RS00380 WP_027008650.1 85494..87020(+) (pilR) [Conchiformibius kuhniae strain 17694]
ATGACCCGACACAGTTTGAACCGCCCCGTTTTGGTGGTGGACGATGAAGCCGATATCCGCGATTTGATGGAAATGACCCT
GATGAAGATGGGTTTGGACGTGGACACCGCCGAAGGCGTTGCCATTGCCAAGAAAAAATTGGACGAAAACAAATATTCGC
TGGTGCTCACCGATATGCGTATGCCGGACGGCTCGGGCTTGGAGGTGGTGGAGCACATTACCGAAGGCGGACACGATACG
CCCGTTGCCGTCATCACCGCCTTCGGCAATGCCGACCAAGCGGTGCAGGCTTTGAAAATCGGTGCGTTTGATTATCTGCA
AAAGCCGATTACGCTGGCGCAGTTGCGCACGCTGGTGAAGTCGGCGGTGCGCGTGCAGGACGAAAACAACCGTCCGCTTG
CCGCCGCGCCCGCACCGCCGCCCGTTGCCGATGCGCCGCCGCCGCGCCAAGCCGCCGCGCCGTCTGCCCCGCCCGTTTTT
TCCGAGCAAAGCCGCATCGATGTGTTTGTCGAACCCGCCGCCGATGCCGCCGCGCACGGTTTGAAACACGAATACGACAT
TCCGCGCATTTTGGGCAAGTCGCAGCAGATTGAGGAAGCGCGCCGTTTAATTCGCAAGCTGGCGCAAACGCAAGTGCCGG
TGTACATTTCCGGCGAAAGCGGTTCGGGCAAGGAGCAGGCGGCGCGGAGCATTCACGAGCTGTCCGAGCGGCGCGACAAG
CCGTTTATCGCGGTAAACTGCGGCGCGATTCCGGAAAACCTGATGGAAAGCGAGTTTTTCGGTTACAAAAAAGGCAGCTT
CACCGGCGCCGACCAAGACCGTTTGGGCTTTTTCCAGCACGCGCACGGCGGCACGCTGTTTTTGGACGAAGTGGCGGATT
TGCCGCTTGCCATGCAGGTGAAGCTGCTGCGCGCCATTCAGGAAAAGACGGTGCGGCGCATCGGCGACGCGCAGGAAGTG
AAAGTGGACGTGCGGATTGTTTCCGCCACCCACAAAAACCTTGCCGCGCTGGTGCAGGAGGGCAGTTTCCGCCAAGACCT
GTTTTACCGCCTGAACGTGGTGTCGCTGCACATGCCGCCCTTGCGCGAAATGCACGAGGATTTGGAACAATTGATTGTGT
ATCTGCTGAAAAAACACCACGGCGGGCAGGGCGTGAAAATGACCGCCGCCGCCCGCGACGCGCTGCTGCACTACAACTAT
CCGGGCAACTTCCGCGAGCTGGAAAACATCTTGGAACGCGCCGTTGCCCTTGCCGCCAACAACGTGATTGACGTGGAAGA
TTTGCAAATCCACAGCGAGCCGGTGAGCTTGGCGGGCGAACACATCATCGCCGAAGAGCCCAATGCCGCACTGCCCGGCT
TCCAAATGGGTCATACCCAGCTTCAAGACTATCTGGACGATGTGGAACGGCAGATTCTGCAACAGGCGCTCACCTACACC
CGCTACAACCGCACCCAAGCGGCGAAAGTATTGGGCATCAGCTTCCGCAGCATGCGCTACCGGCTCGACCGCCTGTCCAT
CGAATAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(190-356)

Response regulator receiver domain (Response_reg)

(10-119)

Bacterial regulatory protein, Fis family (HTH_8)

(465-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

49.203

98.819

0.486
  pilR Acinetobacter baumannii strain A118

41.176

100

0.413