Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHT51_RS27830 Genome accession   NZ_CP108039
Coordinates   6251584..6252264 (+) Length   226 a.a.
NCBI ID   WP_328881649.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00299     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6246584..6257264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT51_RS27805 (OHT51_27855) - 6247835..6248029 (+) 195 WP_030044846.1 hypothetical protein -
  OHT51_RS27820 (OHT51_27870) tig 6249221..6250615 (+) 1395 WP_328881647.1 trigger factor -
  OHT51_RS27825 (OHT51_27875) clpP 6250893..6251513 (+) 621 WP_328881648.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHT51_RS27830 (OHT51_27880) clpP 6251584..6252264 (+) 681 WP_328881649.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHT51_RS27835 (OHT51_27885) clpX 6252445..6253731 (+) 1287 WP_328881650.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHT51_RS27840 (OHT51_27890) - 6253808..6254791 (-) 984 WP_328881651.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25071.44 Da        Isoelectric Point: 4.5790

>NTDB_id=651939 OHT51_RS27830 WP_328881649.1 6251584..6252264(+) (clpP) [Streptomyces sp. NBC_00299]
MNDFPGSGLYDRTRAEYTGPAAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRSQLEEMLAKHSTTPIEKIREDIERDKILTAEDALSYGLIDQIISTRKMNNADVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=651939 OHT51_RS27830 WP_328881649.1 6251584..6252264(+) (clpP) [Streptomyces sp. NBC_00299]
GTGAACGACTTCCCCGGCAGCGGCCTGTACGACCGCACGCGCGCCGAGTACACGGGTCCCGCCGCCGAGTCCCGCTACGT
CATCCCGCGGTTCGTGGAGCGCACCTCGCAGGGCATCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTCACGGCCATCTACGACACGATGCAGTT
CGTGAAGCCGGACGTCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTGGCCGCCGGCACGCCCG
GCAAGCGCATGGCGCTGCCGAACGCCCGTGTGCTGATCCACCAGCCGTACAGCGAGACCGGCCGCGGTCAGGTCTCCGAC
CTGGAGATCGCCGCGAACGAGATCCTGCGGATGCGCTCGCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCCGAT
CGAGAAGATTCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTGTCGTACGGGCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACGCCGACGTTCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

84.071

0.442
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Streptococcus pyogenes JRS4

45.641

86.283

0.394
  clpP Streptococcus pyogenes MGAS315

45.641

86.283

0.394
  clpP Streptococcus pneumoniae R6

45.408

86.726

0.394
  clpP Streptococcus pneumoniae TIGR4

45.408

86.726

0.394
  clpP Streptococcus pneumoniae Rx1

45.408

86.726

0.394
  clpP Streptococcus pneumoniae D39

45.408

86.726

0.394
  clpP Lactococcus lactis subsp. cremoris KW2

44.388

86.726

0.385
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.367

86.726

0.376