Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHT51_RS27825 Genome accession   NZ_CP108039
Coordinates   6250893..6251513 (+) Length   206 a.a.
NCBI ID   WP_328881648.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00299     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6245893..6256513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT51_RS27800 (OHT51_27850) - 6246092..6247222 (-) 1131 WP_328881646.1 acyltransferase family protein -
  OHT51_RS27805 (OHT51_27855) - 6247835..6248029 (+) 195 WP_030044846.1 hypothetical protein -
  OHT51_RS27820 (OHT51_27870) tig 6249221..6250615 (+) 1395 WP_328881647.1 trigger factor -
  OHT51_RS27825 (OHT51_27875) clpP 6250893..6251513 (+) 621 WP_328881648.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHT51_RS27830 (OHT51_27880) clpP 6251584..6252264 (+) 681 WP_328881649.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHT51_RS27835 (OHT51_27885) clpX 6252445..6253731 (+) 1287 WP_328881650.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHT51_RS27840 (OHT51_27890) - 6253808..6254791 (-) 984 WP_328881651.1 hypothetical protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 21704.65 Da        Isoelectric Point: 4.6747

>NTDB_id=651938 OHT51_RS27825 WP_328881648.1 6250893..6251513(+) (clpP) [Streptomyces sp. NBC_00299]
MTNLMPSAAGEPSIGGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLAAADPDKDINLYINSPGGSITAGMAIY
DTMQFIKNDVMTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTAQHT
GQSVEQVTRDSDRDRWFDPEEAKAYGLIDDVITTAAGIPGGGGTGA

Nucleotide


Download         Length: 621 bp        

>NTDB_id=651938 OHT51_RS27825 WP_328881648.1 6250893..6251513(+) (clpP) [Streptomyces sp. NBC_00299]
GTGACGAATCTGATGCCCTCAGCCGCCGGCGAGCCTTCAATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCT
CAACGAGCGGATCATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCGAACAAGATCACCGCACAGCTGCTGCTCCTTG
CCGCCGCGGACCCCGACAAGGACATCAACCTCTACATCAACAGCCCGGGCGGCTCGATCACGGCCGGCATGGCGATCTAC
GACACCATGCAGTTCATCAAGAACGACGTGATGACCATCGCCATGGGCCTCGCCGCCTCCATGGGGCAGTTCCTGCTCAG
CGCGGGCACCCCGGGCAAGCGGTTCGCCCTCCCGAACGCCGAGATCCTGATCCACCAGCCTTCCGCCGGCCTCGCCGGTT
CGGCGTCGGACATCAAGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTCACGGCCCAGCACACC
GGCCAGTCGGTCGAGCAGGTCACCCGTGATTCGGACCGAGACCGCTGGTTCGACCCCGAGGAGGCCAAGGCGTACGGCCT
CATCGACGACGTCATCACCACAGCTGCCGGCATCCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

55.497

92.718

0.515
  clpP Lactococcus lactis subsp. cremoris KW2

51.546

94.175

0.485
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.031

94.175

0.481
  clpP Streptococcus mutans UA159

50

93.204

0.466
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.747

88.35

0.466
  clpP Streptococcus pyogenes MGAS315

49.738

92.718

0.461
  clpP Streptococcus pyogenes JRS4

49.738

92.718

0.461
  clpP Streptococcus thermophilus LMG 18311

51.724

84.466

0.437
  clpP Streptococcus thermophilus LMD-9

51.724

84.466

0.437
  clpP Streptococcus pneumoniae Rx1

51.445

83.981

0.432
  clpP Streptococcus pneumoniae D39

51.445

83.981

0.432
  clpP Streptococcus pneumoniae R6

51.445

83.981

0.432
  clpP Streptococcus pneumoniae TIGR4

51.445

83.981

0.432