Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   LVJ82_RS11545 Genome accession   NZ_CP091511
Coordinates   2235126..2236364 (+) Length   412 a.a.
NCBI ID   WP_058356445.1    Uniprot ID   -
Organism   Vitreoscilla massiliensis strain SN4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2230126..2241364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ82_RS11530 (LVJ82_11530) - 2231473..2231811 (-) 339 WP_058356448.1 helix-hairpin-helix domain-containing protein -
  LVJ82_RS11535 (LVJ82_11535) - 2232253..2233311 (+) 1059 WP_058356447.1 porin -
  LVJ82_RS11540 (LVJ82_11540) pilF 2233424..2235100 (+) 1677 WP_058356446.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LVJ82_RS11545 (LVJ82_11545) pilG 2235126..2236364 (+) 1239 WP_058356445.1 type II secretion system F family protein Machinery gene
  LVJ82_RS11550 (LVJ82_11550) pilD 2236373..2237254 (+) 882 WP_108721531.1 A24 family peptidase Machinery gene
  LVJ82_RS11555 (LVJ82_11555) coaE 2237251..2237853 (+) 603 WP_058356443.1 dephospho-CoA kinase -
  LVJ82_RS11560 (LVJ82_11560) zapD 2237862..2238650 (+) 789 WP_058356442.1 cell division protein ZapD -
  LVJ82_RS11565 (LVJ82_11565) yacG 2238638..2238829 (+) 192 WP_058356441.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45413.39 Da        Isoelectric Point: 9.7294

>NTDB_id=651891 LVJ82_RS11545 WP_058356445.1 2235126..2236364(+) (pilG) [Vitreoscilla massiliensis strain SN4]
MATTKIATKSTVKKEKGSRFSFEGKSRANQQVVRGEVIAKNENEAREKLARRGVQVLHIQKLKTARRKKIKHSDVTLFAR
QLATMMKAGLPLLQAFEIVAKGHSNASMTDLLMDVRSDIEQGTSLSAAFGKHPKYFDKLFCSLVEAGEAGGVLDSLLDKL
ATYMEKTAAIKRKVKGALMYPTAVVVVAVGLIVLMMLFVLPSFGKIYDGLGAELPYLTQIVMNISDFFVDNWWWMLILSV
VLVVVLKVSYSRSFAMQKAWDKFLLNMPIFGQIVKKAAIARWARTTATLFTAGVPLVEALESVAGAAGNIWYEEGTFHIR
SQVQQGTSLTSAMQETNLFPNMVLQMTAIGEESGSVDDMLNKAAEFYEDEVDQAVATLSSLMEPIIMVVLGSIVGFLLIA
MYLPLFNIGNVM

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=651891 LVJ82_RS11545 WP_058356445.1 2235126..2236364(+) (pilG) [Vitreoscilla massiliensis strain SN4]
ATGGCAACCACTAAAATAGCAACAAAATCGACTGTAAAAAAAGAAAAAGGGAGCCGTTTTTCATTTGAAGGCAAAAGCCG
TGCCAATCAGCAAGTTGTGCGTGGCGAGGTCATCGCTAAGAATGAAAACGAGGCGCGTGAAAAACTGGCCAGACGCGGTG
TACAAGTCTTACACATACAAAAATTAAAAACCGCGCGTCGTAAAAAAATCAAACACTCTGATGTAACTTTGTTTGCACGC
CAATTGGCGACGATGATGAAAGCAGGTTTACCATTGTTACAAGCTTTTGAAATCGTGGCAAAAGGTCACTCAAATGCATC
CATGACTGACTTGTTAATGGATGTGCGTTCCGACATTGAACAAGGTACATCTTTATCTGCCGCTTTTGGTAAACATCCAA
AATACTTCGATAAATTATTCTGTAGTTTGGTAGAGGCTGGCGAAGCAGGTGGTGTATTGGATTCATTATTGGATAAATTG
GCGACCTATATGGAGAAAACTGCTGCTATTAAGCGTAAGGTGAAAGGTGCTTTGATGTATCCCACTGCAGTGGTGGTGGT
GGCAGTAGGGTTAATTGTGTTGATGATGCTATTCGTATTGCCTTCATTCGGTAAAATTTATGATGGATTAGGTGCAGAGT
TACCCTATTTAACTCAAATCGTGATGAACATCTCTGATTTTTTTGTTGATAATTGGTGGTGGATGTTGATTTTAAGTGTC
GTTCTTGTTGTGGTGCTTAAAGTTTCTTATTCACGTTCATTTGCAATGCAAAAGGCTTGGGATAAATTCTTACTGAATAT
GCCTATTTTTGGTCAAATTGTTAAAAAGGCCGCCATTGCTCGTTGGGCGCGAACCACTGCTACCTTGTTTACTGCGGGCG
TGCCTTTGGTAGAAGCATTGGAATCGGTTGCGGGTGCGGCTGGTAATATTTGGTATGAAGAAGGCACATTCCATATTCGC
TCACAAGTTCAGCAAGGTACATCTTTGACTTCAGCTATGCAAGAAACCAATTTATTCCCGAATATGGTATTACAAATGAC
GGCCATTGGTGAAGAATCGGGTTCAGTAGACGACATGTTGAATAAAGCTGCTGAATTCTACGAGGATGAAGTTGATCAAG
CCGTAGCAACATTGTCCAGTTTGATGGAGCCCATCATTATGGTGGTGTTGGGTAGTATTGTGGGCTTCTTATTGATTGCC
ATGTACTTGCCATTGTTCAATATTGGTAACGTGATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(78-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

61.845

97.33

0.602
  pilG Neisseria meningitidis 44/76-A

61.347

97.33

0.597
  pilC Legionella pneumophila strain ERS1305867

46.599

96.359

0.449
  pilC Acinetobacter baumannii D1279779

45.226

96.602

0.437
  pilC Pseudomonas stutzeri DSM 10701

43.89

97.33

0.427
  pilC Acinetobacter baylyi ADP1

43.719

96.602

0.422
  pilC Vibrio campbellii strain DS40M4

40.47

92.961

0.376
  pilC Vibrio cholerae strain A1552

39.332

94.417

0.371