Detailed information NTG0651892

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LVJ82_RS11550
• Genome accession: NZ_CP091511
• Coordinates: 2236373..2237254 (+)
• Length: 293 a.a.
• NCBI ID: WP_108721531.1
• Uniprot ID: -
• Organism: Vitreoscilla massiliensis strain SN4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2231373..2242254

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LVJ82_RS11530 (LVJ82_11530)	-	2231473..2231811 (-)	339	WP_058356448.1	helix-hairpin-helix domain-containing protein	-
LVJ82_RS11535 (LVJ82_11535)	-	2232253..2233311 (+)	1059	WP_058356447.1	porin	-
LVJ82_RS11540 (LVJ82_11540)	pilF	2233424..2235100 (+)	1677	WP_058356446.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LVJ82_RS11545 (LVJ82_11545)	pilG	2235126..2236364 (+)	1239	WP_058356445.1	type II secretion system F family protein	Machinery gene
LVJ82_RS11550 (LVJ82_11550)	pilD	2236373..2237254 (+)	882	WP_108721531.1	A24 family peptidase	Machinery gene
LVJ82_RS11555 (LVJ82_11555)	coaE	2237251..2237853 (+)	603	WP_058356443.1	dephospho-CoA kinase	-
LVJ82_RS11560 (LVJ82_11560)	zapD	2237862..2238650 (+)	789	WP_058356442.1	cell division protein ZapD	-
LVJ82_RS11565 (LVJ82_11565)	yacG	2238638..2238829 (+)	192	WP_058356441.1	DNA gyrase inhibitor YacG	-
LVJ82_RS11570 (LVJ82_11570)	-	2238939..2241755 (+)	2817	WP_058356440.1	valine--tRNA ligase	-
LVJ82_RS11575 (LVJ82_11575)	-	2241811..2242095 (-)	285	WP_058356439.1	helix-turn-helix domain-containing protein	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 32266.82 Da
• Isoelectric Point: 8.5993

>NTDB_id=651892 LVJ82_RS11550 WP_108721531.1 2236373..2237254(+) (pilD) [Vitreoscilla massiliensis strain SN4]
MMGLETVVLLFGSMILGLLVGSFLNVVIYRVPEGLNRSWRLQAKQVLDLPLEAGEGARFNILMPPSHCPSCKTAIKPWQN
IPLLSYVFLKGQCQHCKHPISLRYPLVELLTGIVFAVCAWKFGATWTTVAAMVFSAYLIAMVFIDADTQLLPDQLTLPLM
WAGIVFHLAAYLLQADWGMTTLVDSLLGAIVGYLSLWSIFQLFKLVTGKEGMGYGDFKLLAALGAWLGISVLPIIILMSA
LVGLVFALIMKVAKNQPMPFGPYLAISGWLVMILNQPIGQFIQWWLSKSGFGA

Nucleotide

• Length: 882 bp

>NTDB_id=651892 LVJ82_RS11550 WP_108721531.1 2236373..2237254(+) (pilD) [Vitreoscilla massiliensis strain SN4]
ATGATGGGATTGGAAACAGTGGTTTTGTTGTTTGGCTCCATGATATTGGGCTTGTTGGTTGGTAGCTTTTTAAATGTGGT
GATTTACCGTGTGCCTGAGGGTTTAAACCGCAGTTGGCGGCTGCAGGCCAAGCAGGTATTGGATTTGCCATTGGAAGCTG
GTGAGGGCGCGCGTTTTAATATTTTGATGCCGCCTTCGCATTGCCCCAGTTGTAAAACGGCCATCAAGCCTTGGCAGAAT
ATTCCCTTGCTAAGCTATGTGTTTCTTAAAGGGCAATGCCAGCATTGTAAGCATCCAATTTCGCTGCGCTATCCGTTGGT
GGAGTTGTTGACGGGTATTGTGTTTGCCGTGTGTGCATGGAAGTTTGGTGCAACTTGGACAACGGTCGCGGCGATGGTGT
TCAGTGCGTATTTGATTGCGATGGTATTCATTGATGCCGATACGCAATTATTGCCCGATCAACTGACCTTGCCGTTGATG
TGGGCAGGTATTGTGTTTCACTTGGCTGCGTATTTATTACAGGCCGATTGGGGTATGACTACTTTGGTCGATTCTTTGCT
GGGTGCGATTGTCGGTTATCTGAGTTTGTGGAGCATTTTTCAATTGTTCAAATTGGTCACTGGTAAAGAAGGCATGGGTT
ATGGTGACTTCAAACTGTTGGCGGCTTTAGGTGCATGGTTGGGCATCAGTGTGTTGCCGATTATCATCTTGATGTCGGCA
TTGGTGGGTTTGGTATTTGCGCTCATCATGAAAGTCGCCAAAAATCAGCCTATGCCATTTGGTCCTTATTTGGCCATTTC
CGGTTGGTTGGTGATGATTTTGAATCAACCGATAGGCCAATTCATCCAATGGTGGCTGAGTAAGTCAGGATTCGGTGCAT
GA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (132-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-122)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.178	95.904	0.481
pilD	Neisseria gonorrhoeae MS11	51.087	94.198	0.481
pilD	Vibrio campbellii strain DS40M4	47.857	95.563	0.457
pilD	Acinetobacter baumannii D1279779	44.444	89.078	0.396
pilD	Acinetobacter nosocomialis M2	44.444	89.078	0.396