Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   LVJ88_RS08480 Genome accession   NZ_CP091509
Coordinates   1837902..1839140 (-) Length   412 a.a.
NCBI ID   WP_085356335.1    Uniprot ID   A0A1X3DGS2
Organism   Neisseria dumasiana strain LMG 30012     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1832902..1844140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ88_RS08445 (LVJ88_08445) - 1833585..1833950 (-) 366 WP_085417691.1 hypothetical protein -
  LVJ88_RS08450 (LVJ88_08450) - 1834038..1834493 (+) 456 WP_085417692.1 Rrf2 family transcriptional regulator -
  LVJ88_RS08455 (LVJ88_08455) mscL 1834834..1835277 (+) 444 WP_085417693.1 large conductance mechanosensitive channel protein MscL -
  LVJ88_RS08460 (LVJ88_08460) yacG 1835461..1835640 (-) 180 WP_082402963.1 DNA gyrase inhibitor YacG -
  LVJ88_RS08465 (LVJ88_08465) zapD 1835645..1836412 (-) 768 WP_054599204.1 cell division protein ZapD -
  LVJ88_RS08470 (LVJ88_08470) coaE 1836409..1837032 (-) 624 WP_085417694.1 dephospho-CoA kinase -
  LVJ88_RS08475 (LVJ88_08475) pilD 1837036..1837899 (-) 864 WP_054599206.1 A24 family peptidase Machinery gene
  LVJ88_RS08480 (LVJ88_08480) pilG 1837902..1839140 (-) 1239 WP_085356335.1 type II secretion system F family protein Machinery gene
  LVJ88_RS08485 (LVJ88_08485) pilF 1839173..1840852 (-) 1680 WP_085417695.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LVJ88_RS08495 (LVJ88_08495) - 1841533..1842165 (+) 633 WP_054599209.1 isochorismatase family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45338.58 Da        Isoelectric Point: 10.0231

>NTDB_id=651830 LVJ88_RS08480 WP_085356335.1 1837902..1839140(-) (pilG) [Neisseria dumasiana strain LMG 30012]
MSKSTAGSRNVKKEKGIRFNFEGRNIDTEQMVRGEVVAKNEEEARKKLQRRGIKPLRVSKVKAVRKKRITQEDITVFTRQ
LATMMKAGLPLMQAFEIVAKGHSNPSMTQMLMQVRADVEQGSALGKAFAKHPKYFDRFYCNLIAAGEAGGVLESLLDKLA
IYKEKTQAIKKKVKSALTYPIAIVVVAIVLVFIMMVFVLPAFGEVYSSMGAELPGLTQIVMSISDFFVKYAWVIVIGTVV
LCFGLFQWYKKSPMLQKRVDAVMLRLPIFGAIVRKATIARWARTTSTLFAAGVPLVEVLDSVSGAAGNILYEEATHDIRA
KVTQGLSLTSSMQGTDMFPNMVLQMAAIGEESGSLDDMLNKAAEFYEDEVDNAVAQLSSLMEPIIMVVLGSIIGVILVAM
YLPLFNLGNVVG

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=651830 LVJ88_RS08480 WP_085356335.1 1837902..1839140(-) (pilG) [Neisseria dumasiana strain LMG 30012]
ATGAGCAAATCCACAGCAGGAAGCAGAAACGTTAAAAAAGAAAAAGGCATCCGTTTTAATTTTGAAGGTAGGAATATCGA
TACCGAACAAATGGTTCGGGGCGAAGTGGTTGCCAAAAACGAAGAAGAAGCACGCAAAAAGCTTCAACGGCGGGGCATTA
AGCCGTTACGGGTCAGCAAAGTAAAGGCAGTGCGCAAGAAGAGGATTACGCAGGAAGACATTACGGTATTTACACGCCAA
CTGGCCACCATGATGAAAGCCGGCCTGCCTTTGATGCAGGCATTTGAAATCGTAGCCAAAGGGCATTCCAATCCGTCGAT
GACGCAAATGCTGATGCAGGTGCGGGCCGATGTGGAGCAAGGCAGTGCGCTGGGTAAAGCTTTTGCCAAACATCCCAAAT
ATTTCGACCGTTTTTACTGCAATCTGATTGCGGCAGGTGAAGCGGGCGGTGTGTTGGAAAGCTTGTTGGATAAATTGGCG
ATTTATAAAGAAAAAACCCAAGCCATTAAGAAAAAAGTAAAAAGTGCGCTCACTTATCCGATTGCCATTGTGGTTGTGGC
CATTGTTTTGGTATTCATTATGATGGTGTTTGTTTTACCGGCATTCGGTGAAGTGTACAGCAGCATGGGGGCGGAACTGC
CGGGATTGACCCAAATCGTGATGAGTATTTCCGATTTCTTCGTCAAGTATGCTTGGGTTATCGTAATCGGAACGGTGGTG
CTGTGTTTCGGTTTGTTCCAATGGTATAAAAAATCACCGATGCTGCAGAAACGCGTTGATGCAGTGATGCTTCGGCTGCC
TATTTTCGGTGCCATTGTTAGAAAAGCCACCATTGCACGTTGGGCGCGCACAACTTCTACGCTGTTCGCTGCAGGCGTTC
CTTTGGTAGAGGTGTTGGATTCCGTATCGGGTGCGGCGGGCAACATTCTTTACGAAGAAGCGACACACGATATCCGAGCC
AAAGTAACTCAAGGTTTGTCGCTGACATCGAGTATGCAGGGTACGGATATGTTTCCGAATATGGTGCTGCAAATGGCGGC
TATCGGTGAGGAATCGGGTTCGTTAGACGATATGCTGAACAAGGCCGCAGAGTTTTATGAAGATGAAGTTGATAATGCGG
TTGCCCAACTATCGTCGTTAATGGAGCCGATTATTATGGTTGTGCTCGGTTCCATTATCGGTGTGATTTTGGTTGCCATG
TATCTGCCGCTGTTTAACTTGGGTAACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X3DGS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

69.1

99.757

0.689
  pilG Neisseria meningitidis 44/76-A

68.599

100

0.689
  pilC Legionella pneumophila strain ERS1305867

47.395

97.816

0.464
  pilC Acinetobacter baumannii D1279779

45.113

96.845

0.437
  pilC Acinetobacter baylyi ADP1

44.361

96.845

0.43
  pilC Pseudomonas stutzeri DSM 10701

44.584

96.359

0.43
  pilC Vibrio cholerae strain A1552

38.693

96.602

0.374
  pilC Vibrio campbellii strain DS40M4

37.688

96.602

0.364