Detailed information NTG0651829

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LVJ88_RS08475
• Genome accession: NZ_CP091509
• Coordinates: 1837036..1837899 (-)
• Length: 287 a.a.
• NCBI ID: WP_054599206.1
• Uniprot ID: -
• Organism: Neisseria dumasiana strain LMG 30012
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1832036..1842899

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LVJ88_RS08440 (LVJ88_08440)	-	1832043..1833197 (-)	1155	WP_085417690.1	NnrS family protein	-
LVJ88_RS08445 (LVJ88_08445)	-	1833585..1833950 (-)	366	WP_085417691.1	hypothetical protein	-
LVJ88_RS08450 (LVJ88_08450)	-	1834038..1834493 (+)	456	WP_085417692.1	Rrf2 family transcriptional regulator	-
LVJ88_RS08455 (LVJ88_08455)	mscL	1834834..1835277 (+)	444	WP_085417693.1	large conductance mechanosensitive channel protein MscL	-
LVJ88_RS08460 (LVJ88_08460)	yacG	1835461..1835640 (-)	180	WP_082402963.1	DNA gyrase inhibitor YacG	-
LVJ88_RS08465 (LVJ88_08465)	zapD	1835645..1836412 (-)	768	WP_054599204.1	cell division protein ZapD	-
LVJ88_RS08470 (LVJ88_08470)	coaE	1836409..1837032 (-)	624	WP_085417694.1	dephospho-CoA kinase	-
LVJ88_RS08475 (LVJ88_08475)	pilD	1837036..1837899 (-)	864	WP_054599206.1	A24 family peptidase	Machinery gene
LVJ88_RS08480 (LVJ88_08480)	pilG	1837902..1839140 (-)	1239	WP_085356335.1	type II secretion system F family protein	Machinery gene
LVJ88_RS08485 (LVJ88_08485)	pilF	1839173..1840852 (-)	1680	WP_085417695.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LVJ88_RS08495 (LVJ88_08495)	-	1841533..1842165 (+)	633	WP_054599209.1	isochorismatase family protein	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 31471.63 Da
• Isoelectric Point: 8.2150

>NTDB_id=651829 LVJ88_RS08475 WP_054599206.1 1837036..1837899(-) (pilD) [Neisseria dumasiana strain LMG 30012]
MWALFQELAPFAVPLSFLFGLLTGSFLNVVIYRVPVMMERSWTLFAKDHLGLDITAEESETFNLIKPDSRCPKCLARVRP
WQNIPVISYLLLGGKCGSCKTPISKRYPLVELLTGLLFAAVAWQYGWSWITFGGLVFTAMLVALAFIDADTQYLPDQLTL
PLIWLGLIFNINGSFVPLSSAVWGAVCGYMSLWLLCYIYKLLTGKIGMGGGDFKLLAALGAWLGVGVLPVLVFMAALIGI
IAALVMKIAKGQQFAFGPSLAVAGWLIFIANEQILSLTAWWLNASGF

Nucleotide

• Length: 864 bp

>NTDB_id=651829 LVJ88_RS08475 WP_054599206.1 1837036..1837899(-) (pilD) [Neisseria dumasiana strain LMG 30012]
ATGTGGGCTTTATTCCAAGAGCTGGCACCTTTTGCGGTGCCGCTCTCTTTCTTGTTCGGCCTCTTGACCGGCAGTTTTCT
GAATGTGGTGATTTATCGTGTTCCGGTAATGATGGAACGAAGCTGGACATTGTTTGCCAAAGATCATTTGGGTTTGGATA
TAACTGCTGAAGAATCTGAAACGTTTAATCTGATCAAGCCTGATTCGCGATGCCCGAAATGTCTTGCCCGCGTTAGACCG
TGGCAAAATATACCCGTTATCAGTTATCTGTTGTTGGGCGGTAAATGCGGTTCATGTAAAACACCTATCAGCAAACGCTA
TCCGCTGGTGGAACTGTTGACCGGTTTGCTGTTTGCGGCGGTTGCTTGGCAATACGGGTGGAGCTGGATCACTTTTGGCG
GTTTGGTATTCACGGCAATGCTGGTTGCGCTCGCATTTATTGATGCGGATACCCAGTATCTTCCCGACCAGTTGACCTTG
CCGTTAATCTGGCTGGGCTTGATTTTTAATATAAACGGCTCGTTTGTACCGCTTAGTTCCGCAGTATGGGGGGCAGTATG
CGGGTATATGAGTTTATGGTTGCTGTGTTATATTTATAAACTCTTAACGGGCAAAATCGGTATGGGCGGGGGTGATTTTA
AATTATTGGCCGCCTTAGGTGCTTGGTTGGGAGTGGGGGTGTTGCCCGTATTGGTTTTTATGGCGGCACTTATCGGCATT
ATTGCGGCGTTGGTTATGAAAATTGCGAAAGGGCAGCAGTTTGCGTTCGGCCCCAGTTTGGCGGTTGCCGGCTGGCTTAT
TTTTATTGCCAATGAGCAGATATTATCGTTAACGGCATGGTGGTTGAATGCTTCGGGGTTTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	70.29	96.167	0.676
pilD	Vibrio cholerae strain A1552	47.445	95.47	0.453
pilD	Acinetobacter baumannii D1279779	48.473	91.289	0.443
pilD	Vibrio campbellii strain DS40M4	45.683	96.864	0.443
pilD	Acinetobacter nosocomialis M2	48.092	91.289	0.439