Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG878_RS33490 Genome accession   NZ_CP108023
Coordinates   7514616..7515266 (-) Length   216 a.a.
NCBI ID   WP_328890231.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00316     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7509616..7520266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG878_RS33470 (OG878_33530) - 7510376..7511206 (-) 831 WP_328890228.1 alpha/beta fold hydrolase -
  OG878_RS33475 (OG878_33535) - 7511406..7512290 (+) 885 WP_328890229.1 RNA polymerase sigma-70 factor -
  OG878_RS33480 (OG878_33540) - 7512547..7513314 (+) 768 WP_328890230.1 GntR family transcriptional regulator -
  OG878_RS33485 (OG878_33545) - 7513359..7514516 (-) 1158 WP_277324953.1 ROK family transcriptional regulator -
  OG878_RS33490 (OG878_33550) vraR 7514616..7515266 (-) 651 WP_328890231.1 response regulator transcription factor Regulator
  OG878_RS33495 (OG878_33555) - 7515276..7516445 (-) 1170 WP_328890232.1 histidine kinase -
  OG878_RS33500 (OG878_33560) - 7516554..7517492 (+) 939 WP_328890233.1 ATP-binding cassette domain-containing protein -
  OG878_RS33505 (OG878_33565) - 7517495..7518232 (+) 738 WP_328890234.1 ABC transporter permease -
  OG878_RS33510 (OG878_33570) - 7518390..7518824 (+) 435 WP_328890235.1 hypothetical protein -
  OG878_RS33515 (OG878_33575) mug 7518857..7519414 (-) 558 WP_328890236.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23046.86 Da        Isoelectric Point: 5.1429

>NTDB_id=651619 OG878_RS33490 WP_328890231.1 7514616..7515266(-) (vraR) [Streptomyces sp. NBC_00316]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLLRTLRPDVVAMDVRMPLMDGIEATRVVLRTVPDPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPAAVRQLAAEYGTSKAKAAMERASLTDREAAV
LRLMARGLSNAEIAAKLMVGVETVKTHVSAVLAKLGARDRTQAVIAAYESGFVAPS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=651619 OG878_RS33490 WP_328890231.1 7514616..7515266(-) (vraR) [Streptomyces sp. NBC_00316]
ATGCCGGTTACCGTTCTCCTGGTCGACGACGAACCGCTCGTACGCGCGGGCCTGCGCGCGGTACTTGAGGCTCAGCCCGA
TATCGAGGTGGTGGGCGAGGCGGCGGACGGCGCCGCGGTGATCCCGCTCCTGCGCACACTGCGCCCGGATGTGGTGGCGA
TGGATGTGCGGATGCCGCTGATGGACGGCATCGAGGCGACCCGGGTGGTGCTTCGCACGGTGCCTGATCCGCCGAAGATC
CTGGTGGTGACGACGTTCGAAAACGACGAGTACGTGTATGAGGCGCTGCGCGCCGGGGCGGACGGCTTTCTGCTCAAGCG
CGCCAGGCCCGCGGAGATCGTGCATGCGGTACGTCTGGTCGCCGAGGGCGAGTCGCTGCTGTTCCCGGCCGCGGTGCGGC
AGCTCGCCGCCGAGTACGGGACGAGCAAGGCCAAGGCCGCCATGGAGCGGGCATCGCTCACCGACCGCGAGGCCGCGGTG
CTCCGGCTGATGGCCCGGGGGCTGTCGAATGCGGAGATCGCCGCCAAACTGATGGTGGGCGTCGAGACGGTGAAGACCCA
TGTCAGTGCGGTGCTGGCCAAGTTGGGGGCCAGGGACCGGACCCAGGCGGTGATTGCCGCCTACGAGTCCGGGTTTGTGG
CCCCGAGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-206)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.784

98.611

0.412
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.375