Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHB16_RS11900 Genome accession   NZ_CP108008
Coordinates   2582163..2582768 (-) Length   201 a.a.
NCBI ID   WP_271417206.1    Uniprot ID   A0ABV9WXJ1
Organism   Streptomyces sp. NBC_00334     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2577163..2587768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB16_RS11885 (OHB16_11900) - 2578873..2579877 (+) 1005 WP_271415898.1 hypothetical protein -
  OHB16_RS11890 (OHB16_11905) clpX 2579954..2581240 (-) 1287 WP_271415899.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHB16_RS11895 (OHB16_11910) clpP 2581432..2582112 (-) 681 WP_271415900.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHB16_RS11900 (OHB16_11915) clpP 2582163..2582768 (-) 606 WP_271417206.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHB16_RS11905 (OHB16_11920) tig 2583155..2584555 (-) 1401 WP_271415901.1 trigger factor -
  OHB16_RS11920 (OHB16_11935) - 2585149..2585343 (-) 195 WP_007449834.1 hypothetical protein -
  OHB16_RS11925 (OHB16_11940) - 2586044..2587219 (+) 1176 WP_271415911.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21260.14 Da        Isoelectric Point: 4.6831

>NTDB_id=651336 OHB16_RS11900 WP_271417206.1 2582163..2582768(-) (clpP) [Streptomyces sp. NBC_00334]
MPSAAGEPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLASDPEKDIFLYINSPGGSITAGMAIYDTMQY
IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTIE
QITRDSDRDRWFDAFEAKEYGLIDDVIATAAGMPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=651336 OHB16_RS11900 WP_271417206.1 2582163..2582768(-) (clpP) [Streptomyces sp. NBC_00334]
ATGCCCTCAGCCGCCGGCGAGCCCTCCATCGGTGGCGGCCTCGGCGACCAGGTCTACAACCGACTGCTCGGCGAGCGGAT
CATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCCAACAAGATCACCGCACAGCTGCTGCTCCTTGCCTCCGACCCGG
AGAAGGACATCTTCCTGTACATCAACAGCCCGGGCGGTTCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTAC
ATCAAGAACGACGTGGTGACGATCGCCATGGGCCTCGCGGCCTCCATGGGGCAGTTCCTGCTCAGCGCGGGCACCCCCGG
CAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGCCTCGCCGGCTCGGCCTCGGACATCA
AGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTCACCTCGCAGCACACCGGCCAGACGATCGAG
CAGATCACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCCTTCGAGGCCAAGGAGTACGGCCTCATCGACGACGTCAT
CGCCACGGCCGCCGGCATGCCGGGCGGCGGCGGTACGGGCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

58.48

85.075

0.498
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.846

90.547

0.488
  clpP Lactococcus lactis subsp. cremoris KW2

52.717

91.542

0.483
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.174

91.542

0.478
  clpP Streptococcus mutans UA159

55.491

86.07

0.478
  clpP Streptococcus pyogenes MGAS315

52.601

86.07

0.453
  clpP Streptococcus pyogenes JRS4

52.601

86.07

0.453
  clpP Streptococcus thermophilus LMG 18311

50.857

87.065

0.443
  clpP Streptococcus thermophilus LMD-9

50.857

87.065

0.443
  clpP Streptococcus pneumoniae Rx1

50.286

87.065

0.438
  clpP Streptococcus pneumoniae D39

50.286

87.065

0.438
  clpP Streptococcus pneumoniae R6

50.286

87.065

0.438
  clpP Streptococcus pneumoniae TIGR4

50.286

87.065

0.438