Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHB16_RS11895 Genome accession   NZ_CP108008
Coordinates   2581432..2582112 (-) Length   226 a.a.
NCBI ID   WP_271415900.1    Uniprot ID   A0ABV9X0V8
Organism   Streptomyces sp. NBC_00334     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2576432..2587112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB16_RS11885 (OHB16_11900) - 2578873..2579877 (+) 1005 WP_271415898.1 hypothetical protein -
  OHB16_RS11890 (OHB16_11905) clpX 2579954..2581240 (-) 1287 WP_271415899.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHB16_RS11895 (OHB16_11910) clpP 2581432..2582112 (-) 681 WP_271415900.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHB16_RS11900 (OHB16_11915) clpP 2582163..2582768 (-) 606 WP_271417206.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHB16_RS11905 (OHB16_11920) tig 2583155..2584555 (-) 1401 WP_271415901.1 trigger factor -
  OHB16_RS11920 (OHB16_11935) - 2585149..2585343 (-) 195 WP_007449834.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25090.44 Da        Isoelectric Point: 4.5790

>NTDB_id=651335 OHB16_RS11895 WP_271415900.1 2581432..2582112(-) (clpP) [Streptomyces sp. NBC_00334]
MNDFPGSGLYDRTRAEYTGPSAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQYVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRSQLEEMLAKHSTTPVEKIREDIERDKILTAEDALAYGLIDQIITTRKMDNSSLR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=651335 OHB16_RS11895 WP_271415900.1 2581432..2582112(-) (clpP) [Streptomyces sp. NBC_00334]
GTGAACGACTTCCCCGGCAGCGGCCTGTACGACCGCACGCGTGCCGAGTACACCGGCCCGTCCGCCGAGTCCCGCTACGT
GATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTCCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTCACGGCCATCTACGACACGATGCAGTA
CGTGAAGCCGGACATCCAGACCGTCTGCATGGGCCAGGCCGCCTCCGCCGCCGCCGTCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCGCTGCCGAACGCCCGCGTGCTGATCCACCAGCCGTACAGCGAGACCGGCCGCGGCCAGGTCTCCGAC
CTGGAGATCGCCGCCAACGAGATCCTCCGGATGCGCTCGCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCCGGT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTGGCCTACGGCCTGATCGACCAGA
TCATCACCACCCGGAAGATGGACAACTCCTCTCTCCGCTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.532

83.186

0.42
  clpP Streptococcus pyogenes MGAS315

44.776

88.938

0.398
  clpP Streptococcus pyogenes JRS4

44.776

88.938

0.398
  clpP Streptococcus mutans UA159

43.902

90.708

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

44.059

89.381

0.394
  clpP Streptococcus thermophilus LMD-9

45.128

86.283

0.389
  clpP Streptococcus thermophilus LMG 18311

45.128

86.283

0.389
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.069

89.381

0.385
  clpP Streptococcus pneumoniae Rx1

43.878

86.726

0.381
  clpP Streptococcus pneumoniae D39

43.878

86.726

0.381
  clpP Streptococcus pneumoniae R6

43.878

86.726

0.381
  clpP Streptococcus pneumoniae TIGR4

43.878

86.726

0.381