Detailed information NTG0651334

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OHB16_RS11890
• Genome accession: NZ_CP108008
• Coordinates: 2579954..2581240 (-)
• Length: 428 a.a.
• NCBI ID: WP_271415899.1
• Uniprot ID: A0ABV9X1C4
• Organism: Streptomyces sp. NBC_00334
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2574954..2586240

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHB16_RS11880 (OHB16_11895)	-	2576111..2578735 (-)	2625	WP_328657422.1	valine--tRNA ligase	-
OHB16_RS11885 (OHB16_11900)	-	2578873..2579877 (+)	1005	WP_271415898.1	hypothetical protein	-
OHB16_RS11890 (OHB16_11905)	clpX	2579954..2581240 (-)	1287	WP_271415899.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OHB16_RS11895 (OHB16_11910)	clpP	2581432..2582112 (-)	681	WP_271415900.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHB16_RS11900 (OHB16_11915)	clpP	2582163..2582768 (-)	606	WP_271417206.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHB16_RS11905 (OHB16_11920)	tig	2583155..2584555 (-)	1401	WP_271415901.1	trigger factor	-
OHB16_RS11920 (OHB16_11935)	-	2585149..2585343 (-)	195	WP_007449834.1	hypothetical protein	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46795.60 Da
• Isoelectric Point: 4.7389

>NTDB_id=651334 OHB16_RS11890 WP_271415899.1 2579954..2581240(-) (clpX) [Streptomyces sp. NBC_00334]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEA
AKKALSVAVYNHYKRVQAGENGGAQGREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIEGRAGAKGIGFGATIRSKREIESKDQFEQVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILVEPRNALVKQYERLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQGVMYEVPSRKDVARVVIT
ADVVLSNVNPTLIPRDSRGRGPGEQKTA

Nucleotide

• Length: 1287 bp

>NTDB_id=651334 OHB16_RS11890 WP_271415899.1 2579954..2581240(-) (clpX) [Streptomyces sp. NBC_00334]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGGCCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAAGAGCTGGCCGAGACCA
GCGAGGTGCGCTGGGAGGAGCTCCCGAAGCCCCGCGAGATCTACGAGTTCCTCGAGGGCTACGTGGTCGGCCAGGAGGCG
GCCAAGAAGGCCCTCTCCGTCGCGGTGTACAACCACTACAAGCGGGTCCAGGCCGGTGAGAACGGCGGCGCCCAAGGCCG
CGAGGACGCCATCGAGTTGGCGAAGTCCAACATCCTCCTGCTGGGCCCCACGGGCTCCGGCAAGACCCTCCTCGCCCAGA
CCCTGGCCCGCATGCTGAACGTCCCGTTCGCGATCGCCGACGCCACGGCGCTCACCGAGGCGGGGTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTGATCCAGGCGGCGGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCGCGGAAGAGCGAGAACCCCTCCATCACGCGTGACGTGTCGGGCGAGGGCGTCCAGCAGGCCC
TGCTGAAGATCCTGGAGGGCACCACCGCCTCCGTCCCGCCGCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGCGGTGCCTTCGCGGGCCTGGAGAAGATCATCGAGGGCCGGGCCGGCGC
CAAGGGCATCGGTTTCGGCGCGACGATCCGCTCCAAGCGGGAGATCGAGTCCAAGGACCAGTTCGAGCAGGTCATGCCGG
AGGACCTGGTCAAGTTCGGCATGATCCCCGAGTTCATCGGCAGGCTCCCGGTCATCACCTCGGTGCACAACCTCGACCGC
GAGGCGCTCCTCCAGATCCTGGTCGAGCCGCGCAACGCGCTCGTCAAGCAGTACGAGCGCCTCTTCGAACTCGACGGTGT
GGAGCTGGACTTCGAGCGCGAGGCCCTGGAGGCCATCGCCGACCAGGCCATCCTCCGCCAGACCGGCGCCCGCGGCCTGC
GCGCCATCATGGAGGAAGTCCTCCAGGGCGTCATGTACGAGGTCCCCTCCCGCAAGGACGTCGCCCGCGTCGTCATCACC
GCCGACGTGGTCCTCTCCAACGTCAACCCGACGCTGATCCCCCGGGATTCGCGCGGGCGCGGCCCGGGCGAGCAGAAGAC
GGCGTAG

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.779	94.159	0.591
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.258	96.028	0.521