Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LZ558_RS03355 Genome accession   NZ_CP091424
Coordinates   748911..750131 (-) Length   406 a.a.
NCBI ID   WP_268119414.1    Uniprot ID   -
Organism   Methylobacter sp. YRD-M1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 743911..755131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ558_RS03325 (LZ558_03300) argJ 744178..745398 (+) 1221 WP_268119409.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  LZ558_RS03330 (LZ558_03305) - 745438..746367 (+) 930 WP_268119410.1 Nudix family hydrolase -
  LZ558_RS03335 (LZ558_03310) yacG 746369..746569 (-) 201 WP_268119411.1 DNA gyrase inhibitor YacG -
  LZ558_RS03340 (LZ558_03315) zapD 746570..747340 (-) 771 WP_268119412.1 cell division protein ZapD -
  LZ558_RS03345 (LZ558_03320) coaE 747354..747950 (-) 597 WP_268119413.1 dephospho-CoA kinase -
  LZ558_RS03350 (LZ558_03325) pilD 747955..748830 (-) 876 WP_268120765.1 A24 family peptidase Machinery gene
  LZ558_RS03355 (LZ558_03330) pilC 748911..750131 (-) 1221 WP_268119414.1 type II secretion system F family protein Machinery gene
  LZ558_RS03360 (LZ558_03335) pilB 750134..751849 (-) 1716 WP_268119416.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LZ558_RS03365 (LZ558_03340) - 751981..754788 (-) 2808 WP_268119417.1 valine--tRNA ligase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 45189.48 Da        Isoelectric Point: 7.8772

>NTDB_id=651086 LZ558_RS03355 WP_268119414.1 748911..750131(-) (pilC) [Methylobacter sp. YRD-M1]
MAEQTEQLDFIWEGVDKSRKKTKGLISAKSEMIARTDLRRMGIRVTKLKKKPKPLFGARVQSITPGDIAVFARQLATMLE
AGVPLVQSFDIIGKGHDNPSMQKMLLEIKADIEGGATLAEALNKRPQQFDELFCNLVQAGEQAGVLESLLDKIATYKEKT
ESLKKKIKKALTYPIAVLVVAFIVTAILLLFVVPVFQELFQSFGADLPAFTKFVISISEWMQEWWWLFFGSIGAAIYTYL
FFQKRSRPFNHFMDKMFLKIPIIGMILHKSAIARFSRTLSTMSAAGVPLVEALESVAGACGNVIYADAVLKMREEVAMGQ
RLQFAMQQTQLFPHMVMQMLAIGEESGSIDEMLAKVADFYEEEVDNLVDNLSSLMEPIIMVILGILVGGLIVAMYLPIFK
LGAAIG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=651086 LZ558_RS03355 WP_268119414.1 748911..750131(-) (pilC) [Methylobacter sp. YRD-M1]
ATGGCAGAACAAACCGAACAGCTGGATTTCATCTGGGAAGGCGTCGACAAAAGCAGAAAAAAAACCAAGGGGTTGATTTC
TGCAAAAAGCGAGATGATAGCGAGAACCGATTTAAGACGCATGGGGATACGCGTCACCAAACTCAAGAAAAAACCCAAGC
CCTTATTCGGCGCCAGAGTCCAATCAATTACGCCGGGCGATATAGCGGTCTTTGCCCGGCAATTAGCGACCATGCTGGAA
GCGGGCGTGCCTTTAGTGCAGTCTTTCGATATCATCGGCAAAGGACACGATAACCCCAGCATGCAGAAAATGCTGTTGGA
GATTAAAGCGGATATTGAAGGCGGCGCAACTTTGGCTGAAGCCCTTAACAAGCGGCCGCAGCAATTTGATGAACTTTTCT
GCAATCTGGTCCAAGCGGGCGAACAGGCGGGAGTACTGGAATCTTTGCTGGATAAGATCGCGACTTACAAGGAAAAAACC
GAATCCCTGAAAAAGAAAATCAAGAAAGCGCTGACTTATCCTATTGCGGTATTGGTTGTCGCATTTATCGTCACGGCCAT
TCTTCTGCTTTTTGTCGTGCCTGTTTTTCAAGAACTTTTCCAGAGCTTTGGCGCGGATTTGCCGGCCTTCACGAAATTTG
TCATAAGCATATCGGAATGGATGCAGGAATGGTGGTGGCTATTTTTCGGCAGCATCGGCGCGGCGATTTATACCTATCTT
TTCTTCCAGAAACGCTCGCGGCCGTTCAATCACTTCATGGATAAAATGTTCCTGAAAATACCCATAATTGGCATGATCTT
ACACAAGTCGGCTATTGCCCGTTTCTCAAGAACTCTATCGACCATGTCCGCAGCCGGCGTGCCGCTGGTGGAAGCACTGG
AGTCAGTAGCCGGCGCTTGCGGAAATGTCATCTATGCGGACGCCGTCTTAAAAATGCGTGAAGAAGTAGCCATGGGACAG
CGCCTGCAATTTGCCATGCAACAAACCCAACTTTTCCCTCACATGGTCATGCAGATGCTTGCCATCGGTGAAGAGTCAGG
CTCTATCGATGAAATGCTGGCCAAAGTGGCCGATTTTTATGAAGAGGAAGTCGACAATCTGGTCGATAATTTAAGCAGTC
TGATGGAACCCATTATCATGGTAATCTTAGGCATTCTGGTCGGCGGCCTGATCGTTGCCATGTATCTGCCTATTTTCAAA
CTCGGCGCGGCCATCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

60.302

98.03

0.591
  pilC Acinetobacter baumannii D1279779

55.919

97.783

0.547
  pilC Pseudomonas stutzeri DSM 10701

55.556

97.537

0.542
  pilC Acinetobacter baylyi ADP1

54.156

97.783

0.53
  pilG Neisseria meningitidis 44/76-A

47.75

98.522

0.47
  pilG Neisseria gonorrhoeae MS11

47.5

98.522

0.468
  pilC Vibrio cholerae strain A1552

42.118

100

0.421
  pilC Vibrio campbellii strain DS40M4

39.95

98.03

0.392