Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LZ558_RS03350 Genome accession   NZ_CP091424
Coordinates   747955..748830 (-) Length   291 a.a.
NCBI ID   WP_268120765.1    Uniprot ID   -
Organism   Methylobacter sp. YRD-M1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 742955..753830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ558_RS03320 (LZ558_03295) - 743020..744165 (+) 1146 WP_268119408.1 cation diffusion facilitator family transporter -
  LZ558_RS03325 (LZ558_03300) argJ 744178..745398 (+) 1221 WP_268119409.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  LZ558_RS03330 (LZ558_03305) - 745438..746367 (+) 930 WP_268119410.1 Nudix family hydrolase -
  LZ558_RS03335 (LZ558_03310) yacG 746369..746569 (-) 201 WP_268119411.1 DNA gyrase inhibitor YacG -
  LZ558_RS03340 (LZ558_03315) zapD 746570..747340 (-) 771 WP_268119412.1 cell division protein ZapD -
  LZ558_RS03345 (LZ558_03320) coaE 747354..747950 (-) 597 WP_268119413.1 dephospho-CoA kinase -
  LZ558_RS03350 (LZ558_03325) pilD 747955..748830 (-) 876 WP_268120765.1 A24 family peptidase Machinery gene
  LZ558_RS03355 (LZ558_03330) pilC 748911..750131 (-) 1221 WP_268119414.1 type II secretion system F family protein Machinery gene
  LZ558_RS03360 (LZ558_03335) pilB 750134..751849 (-) 1716 WP_268119416.1 type IV-A pilus assembly ATPase PilB Machinery gene

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32333.40 Da        Isoelectric Point: 7.4200

>NTDB_id=651085 LZ558_RS03350 WP_268120765.1 747955..748830(-) (pilD) [Methylobacter sp. YRD-M1]
MQQLNILLNSPYILSALAGIIGLMVGSFLNVVIYRLPIMMQRNWKKECMEYLELSQEETPETEPFNLAFPLSHCPKCNTP
IKPHHNIPVISYLFLKGKCAQCRTPISSRYPVIEAFTAIASVIVAWHFGYTPQTIFALVLTWSLIALSGIDIDHQLLPDS
ITLPALWLGLFLSLFALFADAHSSIIGAIAGYLALWTVYHLFKLATGKEGMGYGDFKLLALFGAWLGWQSLPVIILLSSL
VGSVIGIAMIVLVNRDHRIPIPFGPYLAMAGWIALIWGNDINQFYLTKVGL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=651085 LZ558_RS03350 WP_268120765.1 747955..748830(-) (pilD) [Methylobacter sp. YRD-M1]
ATGCAACAGCTGAACATCCTTTTAAATTCCCCCTATATTCTATCCGCACTGGCGGGCATTATTGGCTTAATGGTCGGCAG
TTTTCTCAATGTCGTCATTTACCGATTGCCGATCATGATGCAACGAAACTGGAAAAAGGAGTGCATGGAATACCTGGAGC
TTAGCCAGGAAGAAACGCCTGAAACAGAGCCTTTCAATCTGGCTTTTCCGCTGTCGCACTGCCCAAAATGCAATACGCCC
ATTAAGCCGCATCACAACATACCCGTTATCAGCTATTTATTTTTAAAAGGCAAATGCGCGCAATGCCGGACACCTATTTC
CTCACGCTATCCGGTAATAGAAGCTTTCACGGCGATTGCATCTGTCATCGTGGCCTGGCATTTTGGCTATACGCCGCAAA
CGATTTTTGCTTTAGTGCTGACCTGGTCGTTGATCGCATTAAGCGGCATCGATATTGACCATCAATTATTGCCGGACTCC
ATCACGCTGCCGGCATTATGGCTGGGCTTATTTTTAAGCCTGTTTGCGCTATTTGCTGATGCGCACTCCAGCATTATAGG
GGCCATTGCCGGTTATCTGGCGCTCTGGACTGTTTATCATCTGTTCAAACTGGCTACGGGAAAAGAGGGCATGGGCTATG
GCGATTTCAAATTGCTGGCTTTATTCGGCGCCTGGCTGGGTTGGCAGAGCCTGCCCGTTATTATCCTGTTGTCATCACTG
GTGGGCTCGGTCATAGGCATTGCCATGATTGTTCTCGTCAACCGCGATCATAGAATCCCCATCCCATTCGGCCCTTATCT
GGCAATGGCAGGCTGGATTGCACTAATCTGGGGCAATGACATCAACCAGTTTTACCTGACCAAAGTAGGCTTATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

52.5

96.22

0.505
  pilD Acinetobacter baumannii D1279779

51.613

95.876

0.495
  pilD Acinetobacter nosocomialis M2

51.254

95.876

0.491
  pilD Vibrio cholerae strain A1552

50.36

95.533

0.481
  pilD Neisseria gonorrhoeae MS11

49.817

93.814

0.467