Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHA62_RS30155 Genome accession   NZ_CP107998
Coordinates   6743044..6743724 (+) Length   226 a.a.
NCBI ID   WP_328683354.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00343     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6738044..6748724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA62_RS30125 (OHA62_30100) - 6738488..6739594 (-) 1107 WP_328683351.1 acyltransferase family protein -
  OHA62_RS30130 (OHA62_30105) - 6739898..6740092 (+) 195 WP_328683352.1 hypothetical protein -
  OHA62_RS30145 (OHA62_30120) tig 6740681..6742048 (+) 1368 WP_328683353.1 trigger factor -
  OHA62_RS30150 (OHA62_30125) clpP 6742391..6742993 (+) 603 WP_327407260.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHA62_RS30155 (OHA62_30130) clpP 6743044..6743724 (+) 681 WP_328683354.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHA62_RS30160 (OHA62_30135) clpX 6743884..6745170 (+) 1287 WP_328683355.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHA62_RS30165 (OHA62_30140) - 6745249..6746256 (-) 1008 WP_328683356.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25042.43 Da        Isoelectric Point: 4.6606

>NTDB_id=651023 OHA62_RS30155 WP_328683354.1 6743044..6743724(+) (clpP) [Streptomyces sp. NBC_00343]
MNDFPGNGLYEHARAEYTGPAAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISIYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDLLAKHSKTPIEKIREDIERDKILTAEDALSYGLIDQIISTRKMNNADVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=651023 OHA62_RS30155 WP_328683354.1 6743044..6743724(+) (clpP) [Streptomyces sp. NBC_00343]
GTGAACGACTTCCCCGGCAACGGCCTGTACGAGCACGCACGCGCCGAATACACGGGTCCCGCCGCCGAGTCCCGTTACGT
GATCCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGTGTCCAGATCGACGACGCGTCGGCCAACGACGTCATGGCACAGCTGCTGTGCCTGGAGTCGATGGACCCG
GACCGCGACATCTCGATCTACATCAACAGCCCCGGTGGCTCTTTCACGGCGCTGACCGCGATCTACGACACGATGCAGTT
CGTGAAGCCGGACGTCCAGACGGTCTGCATGGGCCAGGCCGCGTCCGCCGCCGCCGTCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCGCTGCCGAACGCGCGCGTGCTGATCCACCAGCCGTACAGCGAGACGGGTCGGGGCCAGGTCTCCGAC
CTCGAAATCGCGGCGAACGAGATCCTCCGGATGCGTGCGCAGCTGGAGGACCTGCTGGCCAAGCACTCGAAGACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTGTCGTACGGCCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACGCCGACGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

84.071

0.442
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.064

83.186

0.425
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Streptococcus pyogenes JRS4

45.641

86.283

0.394
  clpP Streptococcus pyogenes MGAS315

45.641

86.283

0.394
  clpP Streptococcus pneumoniae R6

45.408

86.726

0.394
  clpP Streptococcus pneumoniae TIGR4

45.408

86.726

0.394
  clpP Streptococcus pneumoniae Rx1

45.408

86.726

0.394
  clpP Streptococcus pneumoniae D39

45.408

86.726

0.394
  clpP Lactococcus lactis subsp. cremoris KW2

44.388

86.726

0.385
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.367

86.726

0.376