NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OHA62_RS30150	Genome accession	NZ_CP107998
Coordinates	6742391..6742993 (+)	Length	200 a.a.
NCBI ID	WP_327407260.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_00343
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 6737391..6747993

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHA62_RS30125 (OHA62_30100)	-	6738488..6739594 (-)	1107	WP_328683351.1	acyltransferase family protein	-
OHA62_RS30130 (OHA62_30105)	-	6739898..6740092 (+)	195	WP_328683352.1	hypothetical protein	-
OHA62_RS30145 (OHA62_30120)	tig	6740681..6742048 (+)	1368	WP_328683353.1	trigger factor	-
OHA62_RS30150 (OHA62_30125)	clpP	6742391..6742993 (+)	603	WP_327407260.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHA62_RS30155 (OHA62_30130)	clpP	6743044..6743724 (+)	681	WP_328683354.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHA62_RS30160 (OHA62_30135)	clpX	6743884..6745170 (+)	1287	WP_328683355.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OHA62_RS30165 (OHA62_30140)	-	6745249..6746256 (-)	1008	WP_328683356.1	hypothetical protein	-

Sequence

Protein

Download Length: 200 a.a. Molecular weight: 21139.95 Da Isoelectric Point: 4.6663

                                >NTDB_id=651022 OHA62_RS30150 WP_327407260.1 6742391..6742993(+) (clpP) [Streptomyces sp. NBC_00343]

MPTAAGEPSIGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQFI

KNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKRRMAELTSQHTGQSIEQ

VTRDSDRDRWFDANEAKDYGLIDDVIPTAAGMPGGGGTGA

Nucleotide

Download Length: 603 bp

                                >NTDB_id=651022 OHA62_RS30150 WP_327407260.1 6742391..6742993(+) (clpP) [Streptomyces sp. NBC_00343]

ATGCCTACAGCCGCCGGCGAGCCCTCTATCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGTGAGCGGATCAT

CTTTCTCGGCCAGGCGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGCTCCTCCTCCTTGCCGCTGACCCCGACA

AGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTTCATC

AAGAACGACGTGGTGACCATCGCCATGGGCCTCGCCGCCTCCATGGGCCAGTTCCTTCTCAGCGCGGGTACCCCGGGCAA

GCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGCCTGGCCGGTTCGGCCTCCGACATCAAGA

TCCACGCGGAGCGGCTGCTGCACACCAAGCGGCGCATGGCCGAGCTCACGTCCCAGCACACGGGCCAGAGCATCGAGCAG

GTCACCCGCGACTCGGACCGCGACCGTTGGTTCGACGCGAACGAGGCCAAGGACTACGGCCTCATCGACGACGTGATTCC

CACGGCCGCCGGTATGCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	55.08	93.5	0.515
clpP	Lactococcus lactis subsp. cremoris KW2	51.323	94.5	0.485
clpP	Streptococcus mutans UA159	51.323	94.5	0.485
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	50.794	94.5	0.48
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	50.526	95	0.48
clpP	Streptococcus pyogenes MGAS315	49.206	94.5	0.465
clpP	Streptococcus pyogenes JRS4	49.206	94.5	0.465
clpP	Streptococcus thermophilus LMG 18311	49.206	94.5	0.465
clpP	Streptococcus thermophilus LMD-9	49.206	94.5	0.465
clpP	Streptococcus pneumoniae Rx1	48.677	94.5	0.46
clpP	Streptococcus pneumoniae D39	48.677	94.5	0.46
clpP	Streptococcus pneumoniae R6	48.677	94.5	0.46
clpP	Streptococcus pneumoniae TIGR4	48.677	94.5	0.46

Detailed information NTG0651022