Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHS57_RS12670 Genome accession   NZ_CP107968
Coordinates   2871633..2872238 (-) Length   201 a.a.
NCBI ID   WP_031231653.1    Uniprot ID   A0ABZ2AFN1
Organism   Streptomyces sp. NBC_00370     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2866633..2877238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS57_RS12655 (OHS57_12675) - 2868348..2869352 (+) 1005 WP_041989755.1 hypothetical protein -
  OHS57_RS12660 (OHS57_12680) clpX 2869433..2870725 (-) 1293 WP_041989752.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHS57_RS12665 (OHS57_12685) clpP 2870894..2871568 (-) 675 WP_041989749.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHS57_RS12670 (OHS57_12690) clpP 2871633..2872238 (-) 606 WP_031231653.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHS57_RS12675 (OHS57_12695) tig 2872589..2874001 (-) 1413 WP_328581974.1 trigger factor -
  OHS57_RS12690 (OHS57_12710) - 2874599..2874793 (-) 195 WP_041989743.1 hypothetical protein -
  OHS57_RS12695 (OHS57_12715) - 2875251..2876495 (+) 1245 WP_328581975.1 acyltransferase family protein -
  OHS57_RS12700 (OHS57_12720) - 2876449..2876892 (-) 444 WP_041989740.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21126.92 Da        Isoelectric Point: 4.3926

>NTDB_id=650408 OHS57_RS12670 WP_031231653.1 2871633..2872238(-) (clpP) [Streptomyces sp. NBC_00370]
MPYAAGEPSLGGGLGDQVYSRLLGERIIFLGQQVDDDIANKITAQLLLLAAEPEKDIYLYINSPGGSVTAGMAVYDTMQY
IPNDVVTIGMGMAASMGQFLLTGGTAGKRFALPNTDILMHQGSAGLGGTASDIKIQAEQLLRTKKRMAEITARHTGQTEE
TIIRDGDRDRWFTAEEAVSYGIIDEIISAASGVPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=650408 OHS57_RS12670 WP_031231653.1 2871633..2872238(-) (clpP) [Streptomyces sp. NBC_00370]
ATGCCCTACGCCGCCGGTGAACCGTCCCTCGGTGGTGGCCTCGGCGACCAGGTCTACAGCCGACTGCTCGGCGAGCGGAT
CATCTTCCTCGGCCAGCAGGTCGACGACGACATCGCCAACAAGATCACAGCACAGCTGCTCCTCCTCGCGGCCGAGCCCG
AGAAGGACATCTACCTCTACATCAACAGCCCCGGTGGCTCGGTCACGGCCGGCATGGCCGTCTACGACACCATGCAGTAC
ATCCCGAACGACGTGGTCACCATCGGTATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTGACCGGCGGCACGGCGGG
CAAGCGCTTCGCGCTGCCCAACACCGACATCCTCATGCACCAGGGCTCGGCGGGCCTCGGCGGCACCGCGTCCGACATCA
AGATCCAGGCCGAGCAGCTGCTCCGTACGAAGAAGCGCATGGCCGAGATCACCGCGCGCCACACCGGTCAGACCGAAGAG
ACGATCATCCGCGACGGTGACCGTGACCGCTGGTTCACCGCCGAGGAAGCCGTGTCGTACGGCATCATCGACGAGATCAT
CTCCGCTGCTTCGGGTGTTCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

51.596

93.532

0.483
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.262

95.025

0.478
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.064

93.532

0.478
  clpP Bacillus subtilis subsp. subtilis str. 168

55.814

85.572

0.478
  clpP Streptococcus mutans UA159

53.179

86.07

0.458
  clpP Streptococcus pyogenes MGAS315

52.023

86.07

0.448
  clpP Streptococcus pyogenes JRS4

52.023

86.07

0.448
  clpP Streptococcus pneumoniae Rx1

49.718

88.06

0.438
  clpP Streptococcus pneumoniae D39

49.718

88.06

0.438
  clpP Streptococcus pneumoniae R6

49.718

88.06

0.438
  clpP Streptococcus pneumoniae TIGR4

49.718

88.06

0.438
  clpP Streptococcus thermophilus LMG 18311

50.575

86.567

0.438
  clpP Streptococcus thermophilus LMD-9

50.575

86.567

0.438