Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHS57_RS12665 Genome accession   NZ_CP107968
Coordinates   2870894..2871568 (-) Length   224 a.a.
NCBI ID   WP_041989749.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00370     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2865894..2876568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS57_RS12655 (OHS57_12675) - 2868348..2869352 (+) 1005 WP_041989755.1 hypothetical protein -
  OHS57_RS12660 (OHS57_12680) clpX 2869433..2870725 (-) 1293 WP_041989752.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHS57_RS12665 (OHS57_12685) clpP 2870894..2871568 (-) 675 WP_041989749.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHS57_RS12670 (OHS57_12690) clpP 2871633..2872238 (-) 606 WP_031231653.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHS57_RS12675 (OHS57_12695) tig 2872589..2874001 (-) 1413 WP_328581974.1 trigger factor -
  OHS57_RS12690 (OHS57_12710) - 2874599..2874793 (-) 195 WP_041989743.1 hypothetical protein -
  OHS57_RS12695 (OHS57_12715) - 2875251..2876495 (+) 1245 WP_328581975.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24541.88 Da        Isoelectric Point: 4.6002

>NTDB_id=650407 OHS57_RS12665 WP_041989749.1 2870894..2871568(-) (clpP) [Streptomyces sp. NBC_00370]
MVNTHMNDYSASGLYTGPQVDNRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDR
DISIYINSPGGSMTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTAGKRLALPNARVLIHQPSSQTGREQLSDLE
IAANEILRMRSQLEEMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLVDQIVSTRKTTAAAAA

Nucleotide


Download         Length: 675 bp        

>NTDB_id=650407 OHS57_RS12665 WP_041989749.1 2870894..2871568(-) (clpP) [Streptomyces sp. NBC_00370]
ATGGTGAACACCCACATGAACGACTACTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTACGTCATCCC
GCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCC
TCGGCGTGCAGATCGACGACGCGTCCGCCAACGACGTCATGGCGCAGCTGCTCTGCCTGGAGTCGATGGACCCGGACCGC
GACATCTCCATCTACATCAACAGCCCCGGCGGCTCGATGACGGCTCTGACCGCCATCTACGACACGATGCAGTTCGTGAA
GCCGGACATCCAGACCGTGTGCATGGGACAGGCGGCCTCCGCCGCAGCCGTGCTGCTCGCCGCCGGCACCGCCGGCAAGC
GACTGGCGCTGCCCAACGCCCGCGTGCTGATCCACCAGCCGTCCAGCCAGACCGGCCGTGAGCAGCTCTCCGACCTGGAG
ATCGCGGCCAACGAGATCCTGCGGATGCGCTCCCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCCGATCGAGAA
GATCCGCGACGACATCGAGCGCGACAAGATCCTCACCGCCGAGGACGCGCTGGCGTACGGTCTGGTCGACCAGATCGTCT
CGACCCGTAAGACCACGGCCGCAGCGGCAGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(35-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

84.821

0.433
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.404

83.929

0.406
  clpP Streptococcus thermophilus LMD-9

45.361

86.607

0.393
  clpP Streptococcus pyogenes JRS4

45.361

86.607

0.393
  clpP Streptococcus pyogenes MGAS315

45.361

86.607

0.393
  clpP Streptococcus thermophilus LMG 18311

45.361

86.607

0.393
  clpP Streptococcus mutans UA159

45.789

84.821

0.388
  clpP Streptococcus pneumoniae Rx1

44.56

86.161

0.384
  clpP Streptococcus pneumoniae D39

44.56

86.161

0.384
  clpP Streptococcus pneumoniae TIGR4

44.56

86.161

0.384
  clpP Streptococcus pneumoniae R6

44.56

86.161

0.384
  clpP Lactococcus lactis subsp. cremoris KW2

43.979

85.268

0.375
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.455

85.268

0.371