Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHS81_RS24630 Genome accession   NZ_CP107940
Coordinates   5640606..5641283 (+) Length   225 a.a.
NCBI ID   WP_328391389.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00400     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5635606..5646283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS81_RS24600 (OHS81_24620) - 5636941..5637135 (+) 195 WP_030082107.1 hypothetical protein -
  OHS81_RS24605 (OHS81_24625) - 5637188..5637574 (-) 387 WP_328386840.1 arsenate reductase family protein -
  OHS81_RS24620 (OHS81_24640) tig 5638252..5639640 (+) 1389 WP_328386841.1 trigger factor -
  OHS81_RS24625 (OHS81_24645) clpP 5639938..5640540 (+) 603 WP_030283915.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHS81_RS24630 (OHS81_24650) clpP 5640606..5641283 (+) 678 WP_328391389.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHS81_RS24635 (OHS81_24655) clpX 5641453..5642736 (+) 1284 WP_328386842.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHS81_RS24640 (OHS81_24660) - 5642842..5643795 (-) 954 WP_328386843.1 hypothetical protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24635.88 Da        Isoelectric Point: 4.5572

>NTDB_id=649739 OHS81_RS24630 WP_328391389.1 5640606..5641283(+) (clpP) [Streptomyces sp. NBC_00400]
MNNYPGSGLSQGAESEFSGPRAESRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRSQLEELLAKHSTTPIEKIRDDIERDKILTAEESLAYGLVDQIVSTRKSSVSIG

Nucleotide


Download         Length: 678 bp        

>NTDB_id=649739 OHS81_RS24630 WP_328391389.1 5640606..5641283(+) (clpP) [Streptomyces sp. NBC_00400]
ATGAACAACTACCCCGGCAGCGGCCTCTCCCAGGGCGCGGAGTCCGAGTTTTCCGGCCCGCGCGCCGAATCCCGCTACAT
CGTCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCGGCCAATGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCG
GACCGGGACATCTCGATCTACATCAACAGCCCGGGCGGTTCCTTCACGGCGCTCACGGCCATCTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTCGCCGCCGGTACCCCCG
GCAAGCGGATGGCGCTGCCGAACGCCCGGGTGCTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGCCAGGTCTCCGAC
CTGGAGATCGCCGCCAACGAAATCCTGCGGATGCGTTCGCAGCTGGAGGAGCTGCTGGCCAAGCACTCCACCACCCCGAT
CGAGAAGATCCGGGACGATATCGAGCGTGACAAGATCCTGACCGCCGAGGAGTCCCTGGCGTACGGTCTGGTCGACCAGA
TCGTCTCGACGCGGAAGTCGTCCGTCTCCATCGGGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

84.444

0.431
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.148

84

0.404
  clpP Streptococcus pyogenes MGAS315

46.316

84.444

0.391
  clpP Streptococcus pyogenes JRS4

46.316

84.444

0.391
  clpP Streptococcus thermophilus LMD-9

45.361

86.222

0.391
  clpP Streptococcus mutans UA159

45.361

86.222

0.391
  clpP Streptococcus thermophilus LMG 18311

45.361

86.222

0.391
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

84.889

0.387
  clpP Streptococcus pneumoniae Rx1

44.56

85.778

0.382
  clpP Streptococcus pneumoniae D39

44.56

85.778

0.382
  clpP Streptococcus pneumoniae R6

44.56

85.778

0.382
  clpP Streptococcus pneumoniae TIGR4

44.56

85.778

0.382
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

84.889

0.378