NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OHS81_RS24625	Genome accession	NZ_CP107940
Coordinates	5639938..5640540 (+)	Length	200 a.a.
NCBI ID	WP_030283915.1	Uniprot ID	A0A8B1PJJ8
Organism	Streptomyces sp. NBC_00400
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 5634938..5645540

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHS81_RS24595 (OHS81_24615)	-	5635145..5636323 (-)	1179	WP_328386839.1	acyltransferase family protein	-
OHS81_RS24600 (OHS81_24620)	-	5636941..5637135 (+)	195	WP_030082107.1	hypothetical protein	-
OHS81_RS24605 (OHS81_24625)	-	5637188..5637574 (-)	387	WP_328386840.1	arsenate reductase family protein	-
OHS81_RS24620 (OHS81_24640)	tig	5638252..5639640 (+)	1389	WP_328386841.1	trigger factor	-
OHS81_RS24625 (OHS81_24645)	clpP	5639938..5640540 (+)	603	WP_030283915.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHS81_RS24630 (OHS81_24650)	clpP	5640606..5641283 (+)	678	WP_328391389.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHS81_RS24635 (OHS81_24655)	clpX	5641453..5642736 (+)	1284	WP_328386842.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OHS81_RS24640 (OHS81_24660)	-	5642842..5643795 (-)	954	WP_328386843.1	hypothetical protein	-

Sequence

Protein

Download Length: 200 a.a. Molecular weight: 21133.97 Da Isoelectric Point: 4.6747

                                >NTDB_id=649738 OHS81_RS24625 WP_030283915.1 5639938..5640540(+) (clpP) [Streptomyces sp. NBC_00400]

MPSAAAEPTFGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPDKDIFLYINSPGGSISAGLAIYDTMQYI

KNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTAFHTGQTVER

ITQDSDRDRWFSADEAKEYGLIDDVMTSAAGVPGGGGTGA

Nucleotide

Download Length: 603 bp

                                >NTDB_id=649738 OHS81_RS24625 WP_030283915.1 5639938..5640540(+) (clpP) [Streptomyces sp. NBC_00400]

ATGCCTTCCGCCGCCGCTGAGCCGACCTTCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGATCAT

CTTCCTCGGCCAGCCGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGCTGCTTCTCCTCGCCGCGGACCCGGACA

AGGACATCTTCCTCTACATCAACTCCCCGGGCGGCTCGATCTCGGCCGGGTTGGCGATCTACGACACCATGCAGTACATC

AAGAACGACGTGGTGACGATCGCGATGGGCCTCGCCGCCTCCATGGGACAGTTCTTGCTGAGCGCCGGCACCCCGGGCAA

GCGCTTCGCGCTGCCGAACGCCGAGATCCTCATCCACCAGCCCTCCGCGGGCCTGGCGGGCTCCGCGTCGGACATCAAGA

TCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGGATGGCGGAGCTGACGGCCTTCCACACCGGTCAGACCGTCGAGCGG

ATCACCCAGGACTCGGACCGCGACCGTTGGTTCTCCGCCGATGAGGCCAAGGAGTACGGCCTGATCGACGATGTGATGAC

CTCCGCCGCCGGCGTTCCGGGCGGGGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-188)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A8B1PJJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	54.255	94	0.51
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	52.105	95	0.495
clpP	Lactococcus lactis subsp. cremoris KW2	51.309	95.5	0.49
clpP	Streptococcus mutans UA159	50.785	95.5	0.485
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	50.785	95.5	0.485
clpP	Streptococcus thermophilus LMG 18311	50.262	95.5	0.48
clpP	Streptococcus thermophilus LMD-9	50.262	95.5	0.48
clpP	Streptococcus pyogenes JRS4	49.738	95.5	0.475
clpP	Streptococcus pyogenes MGAS315	49.738	95.5	0.475
clpP	Streptococcus pneumoniae Rx1	49.215	95.5	0.47
clpP	Streptococcus pneumoniae TIGR4	49.215	95.5	0.47
clpP	Streptococcus pneumoniae D39	49.215	95.5	0.47
clpP	Streptococcus pneumoniae R6	49.215	95.5	0.47

Detailed information NTG0649738