Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHS59_RS29480 Genome accession   NZ_CP107935
Coordinates   6771828..6772505 (+) Length   225 a.a.
NCBI ID   WP_328496374.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00414     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6766828..6777505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS59_RS29450 (OHS59_29455) - 6767159..6767353 (+) 195 WP_107016269.1 hypothetical protein -
  OHS59_RS29455 (OHS59_29460) - 6767723..6768562 (+) 840 WP_328496372.1 alpha/beta hydrolase -
  OHS59_RS29470 (OHS59_29475) tig 6769178..6770593 (+) 1416 WP_328496373.1 trigger factor -
  OHS59_RS29475 (OHS59_29480) clpP 6771126..6771731 (+) 606 WP_328499411.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHS59_RS29480 (OHS59_29485) clpP 6771828..6772505 (+) 678 WP_328496374.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHS59_RS29485 (OHS59_29490) clpX 6772667..6773953 (+) 1287 WP_189777442.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHS59_RS29490 (OHS59_29495) - 6774031..6774972 (-) 942 WP_328496375.1 hypothetical protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24782.20 Da        Isoelectric Point: 4.7225

>NTDB_id=649658 OHS59_RS29480 WP_328496374.1 6771828..6772505(+) (clpP) [Streptomyces sp. NBC_00414]
MNDFPGSGLHRAQAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPD
RDISVYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSDL
EIAANEILRMRAQLEDMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNAAVA

Nucleotide


Download         Length: 678 bp        

>NTDB_id=649658 OHS59_RS29480 WP_328496374.1 6771828..6772505(+) (clpP) [Streptomyces sp. NBC_00414]
GTGAACGACTTCCCCGGCAGCGGACTCCACCGCGCGCAGGCCGAGTACACGGGTCCTCGCGCGGAGTCCCGCTACGTCAT
CCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTCCGTGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCGTGATCT
TCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCCGAC
CGTGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACGGCGCTCACGGCGATCTACGACACGATGCAGTTCGT
GAAGCCGGACGTCCAGACTGTTTGCATGGGTCAGGCCGCCTCCGCCGCCGCGATCCTCCTGGCGGCCGGTACGCCGGGCA
AGCGCATGGCACTTCCGAACGCCCGCGTACTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGCCAGGTATCGGACCTT
GAGATCGCGGCCAACGAGATCCTCCGGATGCGCGCGCAGCTGGAAGACATGCTGGCCAAGCACTCGACGACGCCGATCGA
GAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTCGCGTACGGCCTGATCGACCAGATCA
TCTCGACCCGGAAGATGAACAACGCCGCGGTCGCGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(36-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

84.444

0.444
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.532

83.556

0.422
  clpP Streptococcus mutans UA159

45.729

88.444

0.404
  clpP Streptococcus thermophilus LMD-9

46.667

86.667

0.404
  clpP Streptococcus thermophilus LMG 18311

46.667

86.667

0.404
  clpP Streptococcus pyogenes JRS4

45.641

86.667

0.396
  clpP Streptococcus pyogenes MGAS315

45.641

86.667

0.396
  clpP Streptococcus pneumoniae TIGR4

44.898

87.111

0.391
  clpP Lactococcus lactis subsp. cremoris KW2

44.898

87.111

0.391
  clpP Streptococcus pneumoniae Rx1

44.898

87.111

0.391
  clpP Streptococcus pneumoniae D39

44.898

87.111

0.391
  clpP Streptococcus pneumoniae R6

44.898

87.111

0.391
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.878

87.111

0.382