Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHS59_RS29475 Genome accession   NZ_CP107935
Coordinates   6771126..6771731 (+) Length   201 a.a.
NCBI ID   WP_328499411.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00414     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6766126..6776731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS59_RS29450 (OHS59_29455) - 6767159..6767353 (+) 195 WP_107016269.1 hypothetical protein -
  OHS59_RS29455 (OHS59_29460) - 6767723..6768562 (+) 840 WP_328496372.1 alpha/beta hydrolase -
  OHS59_RS29470 (OHS59_29475) tig 6769178..6770593 (+) 1416 WP_328496373.1 trigger factor -
  OHS59_RS29475 (OHS59_29480) clpP 6771126..6771731 (+) 606 WP_328499411.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHS59_RS29480 (OHS59_29485) clpP 6771828..6772505 (+) 678 WP_328496374.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHS59_RS29485 (OHS59_29490) clpX 6772667..6773953 (+) 1287 WP_189777442.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHS59_RS29490 (OHS59_29495) - 6774031..6774972 (-) 942 WP_328496375.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21233.24 Da        Isoelectric Point: 4.7892

>NTDB_id=649657 OHS59_RS29475 WP_328499411.1 6771126..6771731(+) (clpP) [Streptomyces sp. NBC_00414]
MPTAAGDPIGGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLASDPEKDIFLYINSPGGSITAGMAIYDTMQYI
KNDVVTIAMGMAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSFHTGQTVEQ
ITRDSDRDRWFDPIEAKAYGLIDDIMPTAAGMPGGGGTGAA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=649657 OHS59_RS29475 WP_328499411.1 6771126..6771731(+) (clpP) [Streptomyces sp. NBC_00414]
ATGCCCACAGCCGCCGGCGACCCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGATCAT
CTTCCTCGGCCAGGCGGTCGACGACGACATCGCCAACAAGATCACAGCGCAGTTGCTGCTCCTTGCCTCCGACCCGGAGA
AGGACATCTTCCTCTACATCAACAGCCCCGGCGGCTCGATCACCGCCGGCATGGCGATCTACGACACCATGCAGTACATC
AAGAACGACGTGGTGACGATCGCGATGGGCATGGCGGCCTCCATGGGCCAGTTCCTGCTGAGCGCGGGTACTCCGGGCAA
GCGCTTCGCGCTGCCGAACGCGGAGATCCTGATCCACCAGCCCTCGGCCGGTCTCGCCGGTTCCGCGTCGGACATCAAGA
TCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGGATGGCGGAGCTGACCTCGTTCCACACCGGCCAGACGGTGGAGCAG
ATCACCCGCGACTCGGACCGGGACCGCTGGTTCGACCCGATCGAGGCCAAGGCGTACGGCCTCATCGACGACATCATGCC
CACCGCTGCCGGAATGCCGGGCGGCGGCGGTACCGGGGCGGCCTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

55.615

93.035

0.517
  clpP Lactococcus lactis subsp. cremoris KW2

51.323

94.03

0.483
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.794

94.03

0.478
  clpP Streptococcus mutans UA159

54.913

86.07

0.473
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.448

86.567

0.463
  clpP Streptococcus pyogenes MGAS315

52.601

86.07

0.453
  clpP Streptococcus pyogenes JRS4

52.601

86.07

0.453
  clpP Streptococcus thermophilus LMG 18311

50.867

86.07

0.438
  clpP Streptococcus thermophilus LMD-9

50.867

86.07

0.438
  clpP Streptococcus pneumoniae Rx1

50.289

86.07

0.433
  clpP Streptococcus pneumoniae D39

50.289

86.07

0.433
  clpP Streptococcus pneumoniae R6

50.289

86.07

0.433
  clpP Streptococcus pneumoniae TIGR4

50.289

86.07

0.433