Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHA71_RS33470 Genome accession   NZ_CP107916
Coordinates   7268320..7269000 (+) Length   226 a.a.
NCBI ID   WP_328364494.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00444     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7263320..7274000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA71_RS33440 (OHA71_33435) - 7263558..7264742 (-) 1185 WP_328440664.1 acyltransferase family protein -
  OHA71_RS33445 (OHA71_33440) - 7265187..7265381 (+) 195 WP_210577588.1 hypothetical protein -
  OHA71_RS33460 (OHA71_33455) tig 7265909..7267303 (+) 1395 WP_328440665.1 trigger factor -
  OHA71_RS33465 (OHA71_33460) clpP 7267654..7268268 (+) 615 WP_328364492.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHA71_RS33470 (OHA71_33465) clpP 7268320..7269000 (+) 681 WP_328364494.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHA71_RS33475 (OHA71_33470) clpX 7269185..7270471 (+) 1287 WP_328372359.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHA71_RS33480 (OHA71_33475) - 7270548..7271534 (-) 987 WP_328440666.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25145.65 Da        Isoelectric Point: 4.7619

>NTDB_id=649086 OHA71_RS33470 WP_328364494.1 7268320..7269000(+) (clpP) [Streptomyces sp. NBC_00444]
MNDFPGRGMYDRARAESKVPVAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGSPGKRMALPNARILIHQPYSETGRGQVSD
LEIAANEILRMRAQLEEMLAKHSTTPIEKIREDIERDKILTAEDALSYGLIDQIISTRKINNESVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=649086 OHA71_RS33470 WP_328364494.1 7268320..7269000(+) (clpP) [Streptomyces sp. NBC_00444]
GTGAACGACTTCCCCGGCCGCGGCATGTACGACCGCGCACGCGCCGAGAGCAAGGTGCCCGTCGCCGAGTCCCGGTACGT
CATCCCCCGCTTCGTCGAGCGCACCTCGCAGGGCGTCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCCGGTGGTTCCTTCACGGCGCTGACTGCGATCTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTCCTGCTCGCGGCCGGCTCGCCCG
GCAAGCGCATGGCGCTGCCGAACGCCCGCATCCTGATCCACCAGCCCTACAGCGAGACGGGCCGCGGTCAGGTCTCCGAC
CTGGAGATCGCCGCGAACGAGATCCTCCGGATGCGTGCGCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTGTCGTACGGCCTGATCGATCAGA
TCATCTCGACCCGGAAGATTAACAACGAATCGGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

84.071

0.434
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus mutans UA159

45.098

90.265

0.407
  clpP Streptococcus pyogenes MGAS315

45.455

87.611

0.398
  clpP Streptococcus pyogenes JRS4

45.455

87.611

0.398
  clpP Streptococcus pneumoniae D39

44.898

86.726

0.389
  clpP Streptococcus pneumoniae Rx1

44.898

86.726

0.389
  clpP Streptococcus pneumoniae R6

44.898

86.726

0.389
  clpP Streptococcus pneumoniae TIGR4

44.898

86.726

0.389
  clpP Streptococcus thermophilus LMD-9

45.128

86.283

0.389
  clpP Streptococcus thermophilus LMG 18311

45.128

86.283

0.389
  clpP Lactococcus lactis subsp. cremoris KW2

43.367

86.726

0.376
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

42.347

86.726

0.367