Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHA71_RS33465 Genome accession   NZ_CP107916
Coordinates   7267654..7268268 (+) Length   204 a.a.
NCBI ID   WP_328364492.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00444     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7262654..7273268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA71_RS33435 (OHA71_33430) - 7263087..7263554 (+) 468 WP_328440663.1 HD domain-containing protein -
  OHA71_RS33440 (OHA71_33435) - 7263558..7264742 (-) 1185 WP_328440664.1 acyltransferase family protein -
  OHA71_RS33445 (OHA71_33440) - 7265187..7265381 (+) 195 WP_210577588.1 hypothetical protein -
  OHA71_RS33460 (OHA71_33455) tig 7265909..7267303 (+) 1395 WP_328440665.1 trigger factor -
  OHA71_RS33465 (OHA71_33460) clpP 7267654..7268268 (+) 615 WP_328364492.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHA71_RS33470 (OHA71_33465) clpP 7268320..7269000 (+) 681 WP_328364494.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHA71_RS33475 (OHA71_33470) clpX 7269185..7270471 (+) 1287 WP_328372359.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHA71_RS33480 (OHA71_33475) - 7270548..7271534 (-) 987 WP_328440666.1 hypothetical protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 21739.64 Da        Isoelectric Point: 4.6907

>NTDB_id=649085 OHA71_RS33465 WP_328364492.1 7267654..7268268(+) (clpP) [Streptomyces sp. NBC_00444]
MTNLMPTAAGEPSFGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLAADPDKDINLYINSPGGSITAGMAIYDT
MQFIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSFHTGQ
SIEQITRDSDRDRWFDADEAKEYGLIDDVITHAASLPGGGGTGA

Nucleotide


Download         Length: 615 bp        

>NTDB_id=649085 OHA71_RS33465 WP_328364492.1 7267654..7268268(+) (clpP) [Streptomyces sp. NBC_00444]
GTGACGAATCTGATGCCTACAGCCGCCGGCGAGCCTTCCTTCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCAA
CGAGCGGATCATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCGAACAAGATCACCGCGCAGCTGCTGCTCCTTGCCG
CTGACCCGGACAAGGACATCAACCTCTACATCAACAGCCCCGGCGGCTCGATCACGGCCGGCATGGCGATCTACGACACC
ATGCAGTTCATCAAGAACGACGTGGTGACGATCGCGATGGGCCTCGCCGCCTCGATGGGCCAGTTCCTCCTCAGCGCGGG
TACCCCGGGCAAGCGCTTCGCGCTCCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCAGGCCTCGCCGGTTCGGCCT
CGGACATCAAGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCGGAGCTGACGTCTTTCCACACCGGCCAG
AGCATCGAGCAGATCACCCGCGACTCCGACCGCGACCGTTGGTTCGACGCCGACGAGGCCAAGGAGTACGGCCTGATCGA
CGATGTCATCACGCACGCCGCGAGCTTGCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(19-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

56.545

93.627

0.529
  clpP Lactococcus lactis subsp. cremoris KW2

52.308

95.588

0.5
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.795

95.588

0.495
  clpP Streptococcus mutans UA159

51.295

94.608

0.485
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.785

93.627

0.475
  clpP Streptococcus thermophilus LMG 18311

48.958

94.118

0.461
  clpP Streptococcus thermophilus LMD-9

48.958

94.118

0.461
  clpP Streptococcus pyogenes JRS4

48.947

93.137

0.456
  clpP Streptococcus pyogenes MGAS315

48.947

93.137

0.456
  clpP Streptococcus pneumoniae Rx1

47.917

94.118

0.451
  clpP Streptococcus pneumoniae D39

47.917

94.118

0.451
  clpP Streptococcus pneumoniae R6

47.917

94.118

0.451
  clpP Streptococcus pneumoniae TIGR4

47.917

94.118

0.451