Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | KW3_RS0110250 | Genome accession | NZ_AKGH01000001 |
| Coordinates | 2276540..2277001 (+) | Length | 153 a.a. |
| NCBI ID | WP_000649326.1 | Uniprot ID | A0A0X1KZH2 |
| Organism | Vibrio cholerae H1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2271540..2282001
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KW3_RS0110225 | dsbC | 2271956..2272708 (-) | 753 | WP_000115055.1 | bifunctional protein-disulfide isomerase/oxidoreductase DsbC | - |
| KW3_RS0110230 | xerD | 2272725..2273633 (-) | 909 | WP_001287472.1 | site-specific tyrosine recombinase XerD | - |
| KW3_RS0110235 | fldB | 2273771..2274289 (+) | 519 | WP_000690112.1 | flavodoxin FldB | - |
| KW3_RS0110240 | ampD | 2274564..2275109 (-) | 546 | WP_000567318.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| KW3_RS0110245 | nadC | 2275405..2276295 (+) | 891 | WP_000665274.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| KW3_RS0110250 | pilA | 2276540..2277001 (+) | 462 | WP_000649326.1 | pilin | Machinery gene |
| KW3_RS0110255 | pilB | 2277001..2278689 (+) | 1689 | WP_000957200.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| KW3_RS0110260 | pilC | 2278732..2279958 (+) | 1227 | WP_000648511.1 | type II secretion system F family protein | Machinery gene |
| KW3_RS0110265 | pilD | 2280016..2280891 (+) | 876 | WP_000418747.1 | prepilin peptidase | Machinery gene |
| KW3_RS0110270 | coaE | 2280888..2281496 (+) | 609 | WP_000011557.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 153 a.a. Molecular weight: 15722.14 Da Isoelectric Point: 8.9860
>NTDB_id=64855 KW3_RS0110250 WP_000649326.1 2276540..2277001(+) (pilA) [Vibrio cholerae H1]
MKAYKNKQQKGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSAIGVGLANITALKTNIEDYIATEGSFPATTAGTAAGFT
RLGTVEDMGDGKIVIAPTASGALGGTIKYTFDAGVVSSSKIQLARDANGLWTCSTTVTSEIAPKGCTAGATIN
MKAYKNKQQKGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSAIGVGLANITALKTNIEDYIATEGSFPATTAGTAAGFT
RLGTVEDMGDGKIVIAPTASGALGGTIKYTFDAGVVSSSKIQLARDANGLWTCSTTVTSEIAPKGCTAGATIN
Nucleotide
Download Length: 462 bp
>NTDB_id=64855 KW3_RS0110250 WP_000649326.1 2276540..2277001(+) (pilA) [Vibrio cholerae H1]
ATGAAAGCGTATAAAAACAAACAACAGAAAGGTTTTACCTTAATTGAATTGATGATTGTGGTGGCAGTGATTGGTGTGTT
GGCAGCGATTGCAATTCCTCAATATCAAAATTATGTAAAAAAATCAGCTATTGGGGTTGGCTTAGCAAACATCACAGCAC
TGAAAACTAATATTGAAGATTATATTGCGACAGAAGGCTCTTTTCCTGCAACAACTGCAGGTACGGCCGCAGGATTTACA
CGCTTAGGTACTGTTGAAGACATGGGTGACGGTAAGATTGTAATTGCCCCAACAGCATCAGGTGCATTAGGAGGTACAAT
AAAATACACATTCGATGCTGGTGTAGTATCTAGTTCAAAAATCCAATTAGCAAGAGATGCCAATGGATTATGGACTTGTA
GTACCACCGTTACTAGTGAAATAGCACCAAAAGGCTGTACTGCAGGTGCAACAATTAACTAA
ATGAAAGCGTATAAAAACAAACAACAGAAAGGTTTTACCTTAATTGAATTGATGATTGTGGTGGCAGTGATTGGTGTGTT
GGCAGCGATTGCAATTCCTCAATATCAAAATTATGTAAAAAAATCAGCTATTGGGGTTGGCTTAGCAAACATCACAGCAC
TGAAAACTAATATTGAAGATTATATTGCGACAGAAGGCTCTTTTCCTGCAACAACTGCAGGTACGGCCGCAGGATTTACA
CGCTTAGGTACTGTTGAAGACATGGGTGACGGTAAGATTGTAATTGCCCCAACAGCATCAGGTGCATTAGGAGGTACAAT
AAAATACACATTCGATGCTGGTGTAGTATCTAGTTCAAAAATCCAATTAGCAAGAGATGCCAATGGATTATGGACTTGTA
GTACCACCGTTACTAGTGAAATAGCACCAAAAGGCTGTACTGCAGGTGCAACAATTAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
100 |
100 |
1 |
| pilA | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| pilA | Vibrio cholerae C6706 |
100 |
100 |
1 |
| pilA | Pseudomonas aeruginosa PAK |
42.675 |
100 |
0.438 |
| pilA | Acinetobacter baumannii strain A118 |
42.667 |
98.039 |
0.418 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
41.892 |
96.732 |
0.405 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.86 |
93.464 |
0.373 |
| pilA2 | Legionella pneumophila str. Paris |
39.31 |
94.771 |
0.373 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
38.621 |
94.771 |
0.366 |