Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   L1P09_RS23625 Genome accession   NZ_CP091088
Coordinates   5120684..5121952 (-) Length   422 a.a.
NCBI ID   WP_235768192.1    Uniprot ID   -
Organism   Pseudomonas juntendi strain PP_2463     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5115684..5126952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1P09_RS23610 (L1P09_23610) - 5117361..5118950 (-) 1590 WP_054904623.1 SPOR domain-containing protein -
  L1P09_RS23615 (L1P09_23615) aroB 5118966..5120063 (-) 1098 WP_054904624.1 3-dehydroquinate synthase -
  L1P09_RS23620 (L1P09_23620) aroK 5120161..5120679 (-) 519 WP_009684951.1 shikimate kinase AroK -
  L1P09_RS23625 (L1P09_23625) pilQ 5120684..5121952 (-) 1269 WP_235768192.1 type IV pilus secretin PilQ Machinery gene
  L1P09_RS23630 (L1P09_23630) - 5121876..5122874 (-) 999 WP_054904648.1 pilus assembly protein PilP -
  L1P09_RS23635 (L1P09_23635) - 5122886..5123422 (-) 537 WP_232892345.1 PilN domain-containing protein -
  L1P09_RS23640 (L1P09_23640) pilM 5123419..5124300 (-) 882 WP_232892346.1 type IV pilus biogenesis protein PilM -
  L1P09_RS23645 (L1P09_23645) - 5124479..5126932 (+) 2454 WP_054904628.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45948.73 Da        Isoelectric Point: 4.8491

>NTDB_id=647583 L1P09_RS23625 WP_235768192.1 5120684..5121952(-) (pilQ) [Pseudomonas juntendi strain PP_2463]
MRTRMIYLLAALLPMPLATATPYQGEPLSLHFQDVEIRSVLQVLADYAGVNLVASDDVQGNVTLRLQDVPWDQALDLVLR
SKSLARRQEGNVLLVAPAATLAAQTAEARAGQVLEAQLQPMRRELLPVHHAKAAELAELLKTSLADESLLAGWGSLSVDE
RTNTLVAYLPAERLDELRQLVAQLDVPVRQVAIEARIVEANVDYEKALGVRWGGPLYGDNPLPGKSLFVDLGVERAGSSI
GLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETTKSGATSVSFREASLSLEVTPQITPDN
KVIMAVRVTKDEPDYVNALNDVPPIRKNEVNAKVRVADGETIVIGGVYSTSQNNVVDKVPFLGDLPYVGRLFRRDALQEK
KSELLVFLTPRIMSDQAIAVSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=647583 L1P09_RS23625 WP_235768192.1 5120684..5121952(-) (pilQ) [Pseudomonas juntendi strain PP_2463]
ATGAGAACGAGGATGATCTACCTGCTGGCGGCCCTGCTGCCCATGCCTCTGGCGACCGCGACGCCTTACCAGGGTGAGCC
GCTGTCGCTGCACTTTCAGGATGTCGAGATTCGCTCGGTTTTGCAGGTGCTCGCTGACTATGCCGGCGTCAACCTGGTCG
CCAGCGACGACGTGCAGGGCAATGTCACCCTGCGCTTGCAGGATGTGCCGTGGGATCAGGCGCTGGACCTGGTCTTGCGC
AGCAAAAGCCTCGCCCGGCGCCAGGAGGGTAATGTGCTGCTGGTGGCACCGGCGGCCACGCTGGCTGCGCAAACTGCCGA
AGCGCGTGCGGGGCAGGTGCTGGAGGCGCAGTTGCAGCCCATGCGCCGGGAGCTGTTGCCTGTTCACCATGCCAAGGCTG
CCGAACTTGCGGAACTGCTCAAGACCAGCCTGGCCGACGAAAGCCTGCTCGCCGGGTGGGGCAGCCTGAGTGTCGATGAG
CGCACCAATACCCTGGTGGCCTACCTGCCGGCCGAACGCCTCGATGAGCTGCGGCAACTGGTGGCGCAGCTGGATGTGCC
GGTGCGCCAGGTGGCGATCGAGGCGCGCATCGTCGAGGCCAACGTCGATTACGAGAAAGCCCTTGGGGTGCGCTGGGGCG
GCCCTTTGTATGGCGACAACCCGCTGCCGGGCAAGTCGCTGTTCGTCGACCTGGGTGTCGAGCGGGCTGGCAGCAGCATC
GGCCTTGGCCTGCTGCGCGGGGATGTGCTGCTGGACCTCGAGCTCAGCGCCATGGAAAAAAGCGGCAATGGCGAGATCAT
TTCGCAACCCAAGGTGGTCACGGCCGACAAGGAAACGGCCAGGATCCTCAAGGGTACCGAGGTGCCCTACCAGGAAACCA
CCAAGAGCGGCGCTACCTCGGTGTCGTTCCGCGAGGCCTCGCTGTCGTTGGAGGTGACCCCGCAAATTACCCCGGACAAC
AAGGTAATCATGGCTGTCAGGGTGACCAAGGACGAACCGGATTACGTCAATGCCTTGAACGACGTGCCGCCGATCCGCAA
GAACGAGGTGAATGCCAAGGTTCGCGTGGCCGACGGCGAAACGATCGTGATTGGCGGCGTGTACTCGACTTCGCAAAACA
ATGTGGTCGACAAGGTGCCATTTTTGGGTGATCTGCCGTATGTTGGGCGGCTGTTTCGACGCGATGCATTACAAGAGAAA
AAATCCGAGCTGCTGGTCTTCCTGACTCCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(50-97)

Bacterial type II/III secretion system short domain (Secretin_N)

(125-190)

Bacterial type II and III secretion system protein (Secretin)

(257-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

59.862

100

0.618
  comQ Acinetobacter baylyi ADP1

43.207

100

0.46
  pilQ Acinetobacter baumannii D1279779

42.082

100

0.46
  pilQ Acinetobacter baumannii strain A118

42.082

100

0.46
  pilQ Legionella pneumophila strain Lp02

43.301

99.052

0.429
  pilQ Legionella pneumophila strain ERS1305867

43.301

99.052

0.429
  pilQ Vibrio campbellii strain DS40M4

41.274

100

0.415
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

40.865

98.578

0.403
  pilQ Vibrio cholerae strain A1552

40.865

98.578

0.403
  pilQ Neisseria gonorrhoeae strain FA1090

36.842

99.052

0.365