Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG381_RS17855 Genome accession   NZ_CP107869
Coordinates   3953008..3953613 (-) Length   201 a.a.
NCBI ID   WP_327722488.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00490     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3948008..3958613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG381_RS17840 (OG381_17850) - 3949793..3950734 (+) 942 WP_327717083.1 hypothetical protein -
  OG381_RS17845 (OG381_17855) clpX 3950807..3952096 (-) 1290 WP_307030666.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG381_RS17850 (OG381_17860) clpP 3952275..3952955 (-) 681 WP_327717084.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG381_RS17855 (OG381_17865) clpP 3953008..3953613 (-) 606 WP_327722488.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG381_RS17860 (OG381_17870) tig 3953971..3955371 (-) 1401 WP_327717085.1 trigger factor -
  OG381_RS17875 (OG381_17885) - 3955896..3958058 (-) 2163 WP_327717086.1 serine/threonine-protein kinase -
  OG381_RS17880 (OG381_17890) - 3958134..3958328 (-) 195 WP_030044846.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21306.13 Da        Isoelectric Point: 4.6012

>NTDB_id=647540 OG381_RS17855 WP_327722488.1 3953008..3953613(-) (clpP) [Streptomyces sp. NBC_00490]
MPSAAGEPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQY
IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQSFE
EITRASDRDRWFDAEEAKEYGLIDEVITTAANMPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=647540 OG381_RS17855 WP_327722488.1 3953008..3953613(-) (clpP) [Streptomyces sp. NBC_00490]
ATGCCCTCCGCCGCCGGCGAGCCTTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTTGGCGAGCGGAT
CATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCGAACAAGATCACCGCACAGCTGCTGCTCCTTGCCGCGGACCCGG
ACAAGGACATCTACCTCTACATCAACAGCCCGGGCGGTTCGATCACGGCCGGTATGGCGATCTACGACACCATGCAGTAC
ATCAAGAACGACGTGGTGACGATCGCCATGGGCCTCGCCGCCTCCATGGGCCAGTTCCTGCTCAGCGCCGGCACCCCCGG
CAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCGTCCGCCGGCCTCGCCGGTTCGGCCTCGGACATCA
AGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCGGAGCTGACCTCCCAGCACACCGGTCAGTCGTTCGAG
GAGATCACCCGCGCCTCCGACCGCGACCGCTGGTTCGACGCCGAGGAGGCCAAGGAGTACGGCCTCATCGACGAGGTCAT
CACCACGGCCGCCAACATGCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

58.721

85.572

0.502
  clpP Lactococcus lactis subsp. cremoris KW2

53.261

91.542

0.488
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.846

90.547

0.488
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.717

91.542

0.483
  clpP Streptococcus mutans UA159

54.335

86.07

0.468
  clpP Streptococcus thermophilus LMG 18311

51.429

87.065

0.448
  clpP Streptococcus thermophilus LMD-9

51.429

87.065

0.448
  clpP Streptococcus pyogenes JRS4

52.023

86.07

0.448
  clpP Streptococcus pyogenes MGAS315

52.023

86.07

0.448
  clpP Streptococcus pneumoniae Rx1

51.445

86.07

0.443
  clpP Streptococcus pneumoniae D39

51.445

86.07

0.443
  clpP Streptococcus pneumoniae R6

51.445

86.07

0.443
  clpP Streptococcus pneumoniae TIGR4

51.445

86.07

0.443