Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG381_RS17850 Genome accession   NZ_CP107869
Coordinates   3952275..3952955 (-) Length   226 a.a.
NCBI ID   WP_327717084.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00490     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3947275..3957955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG381_RS17840 (OG381_17850) - 3949793..3950734 (+) 942 WP_327717083.1 hypothetical protein -
  OG381_RS17845 (OG381_17855) clpX 3950807..3952096 (-) 1290 WP_307030666.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG381_RS17850 (OG381_17860) clpP 3952275..3952955 (-) 681 WP_327717084.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG381_RS17855 (OG381_17865) clpP 3953008..3953613 (-) 606 WP_327722488.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG381_RS17860 (OG381_17870) tig 3953971..3955371 (-) 1401 WP_327717085.1 trigger factor -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25031.42 Da        Isoelectric Point: 4.7477

>NTDB_id=647539 OG381_RS17850 WP_327717084.1 3952275..3952955(-) (clpP) [Streptomyces sp. NBC_00490]
MNDHPGSGLYDRTRAEYTGPSAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEEMLAKHSTTPIEKIREDIERDKILTAEEALSYGLIDQIISTRKMNNAAVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=647539 OG381_RS17850 WP_327717084.1 3952275..3952955(-) (clpP) [Streptomyces sp. NBC_00490]
GTGAACGACCACCCCGGCAGCGGCCTGTACGACCGCACGCGCGCCGAGTACACGGGCCCCTCCGCGGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTTCGTGAGTACGACCCGTACGCGAAGCTGTTCGAAGAGCGCGTGA
TCTTCCTCGGCGTCCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCG
GACCGTGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTGACGGCGATCTACGACACGATGCAGTT
CGTGAAGCCGGACGTCCAGACGGTCTGCATGGGGCAGGCGGCCTCCGCCGCGGCCATCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCGCTGCCGAACGCGCGTGTGCTGATCCACCAGCCCTACAGCGAGACCGGTCGCGGTCAGGTCTCCGAC
CTGGAGATCGCCGCCAACGAAATCCTCCGGATGCGCGCGCAGCTGGAGGAGATGCTGGCCAAGCACTCGACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGAGGCGCTCTCCTACGGTCTGATCGACCAGA
TCATCTCCACTCGGAAGATGAACAACGCAGCCGTCCGCTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.158

84.071

0.447
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.532

83.186

0.42
  clpP Streptococcus mutans UA159

46.231

88.053

0.407
  clpP Streptococcus thermophilus LMD-9

47.179

86.283

0.407
  clpP Streptococcus thermophilus LMG 18311

47.179

86.283

0.407
  clpP Streptococcus pyogenes JRS4

45.641

86.283

0.394
  clpP Streptococcus pyogenes MGAS315

45.641

86.283

0.394
  clpP Streptococcus pneumoniae TIGR4

45.408

86.726

0.394
  clpP Lactococcus lactis subsp. cremoris KW2

45.408

86.726

0.394
  clpP Streptococcus pneumoniae Rx1

45.408

86.726

0.394
  clpP Streptococcus pneumoniae D39

45.408

86.726

0.394
  clpP Streptococcus pneumoniae R6

45.408

86.726

0.394
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.388

86.726

0.385