Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   L1O02_RS04685 Genome accession   NZ_CP091067
Coordinates   994339..995556 (-) Length   405 a.a.
NCBI ID   WP_235759623.1    Uniprot ID   -
Organism   Pseudomonas sp. BC42     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 989339..1000556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1O02_RS04645 (L1O02_04645) - 990054..990227 (-) 174 WP_060841145.1 DUF3094 family protein -
  L1O02_RS04650 (L1O02_04650) - 990416..991045 (-) 630 WP_060841144.1 DUF1780 domain-containing protein -
  L1O02_RS04655 (L1O02_04655) - 991192..991659 (+) 468 WP_235759617.1 FAD/FMN-containing dehydrogenase -
  L1O02_RS04660 (L1O02_04660) - 991656..992345 (+) 690 WP_235759619.1 energy-coupling factor ABC transporter permease -
  L1O02_RS04665 (L1O02_04665) - 992409..992624 (+) 216 WP_016968161.1 hypothetical protein -
  L1O02_RS04670 (L1O02_04670) yacG 992644..992847 (-) 204 WP_060841142.1 DNA gyrase inhibitor YacG -
  L1O02_RS04675 (L1O02_04675) coaE 992844..993467 (-) 624 WP_060841141.1 dephospho-CoA kinase -
  L1O02_RS04680 (L1O02_04680) pilD 993464..994336 (-) 873 WP_235759621.1 A24 family peptidase Machinery gene
  L1O02_RS04685 (L1O02_04685) pilC 994339..995556 (-) 1218 WP_235759623.1 type II secretion system F family protein Machinery gene
  L1O02_RS04690 (L1O02_04690) - 995878..996294 (+) 417 WP_235759625.1 pilin -
  L1O02_RS04695 (L1O02_04695) - 996536..996892 (+) 357 WP_060841137.1 BON domain-containing protein -
  L1O02_RS04700 (L1O02_04700) - 997083..1000001 (-) 2919 WP_060844662.1 DUF748 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43907.52 Da        Isoelectric Point: 10.5686

>NTDB_id=647474 L1O02_RS04685 WP_235759623.1 994339..995556(-) (pilC) [Pseudomonas sp. BC42]
MAAKAPTTSVYLWHGIDGQGQVMHGELSAANPGLIRARLRKQGITPTRVRRKPRAWPRLGQGISPREIALFTRQLATLMQ
AGVPLLQAFDIIAEGFEQPLMRQLLASLKREIEAGSSLASALRRHPRHFDALYCNLVDAGEQAGALDTLLERVATHKEKS
ENLKTRVKQAMVYPLAVIGVAVVVSSILLLKVVPQFQSLFAGFDAELPPLTQWVINLSQVLQRHGGLLLAASLLVGVGLI
QAYRRSARLRDTVDVGLLRLPLAGPLLQKSAVARYARTLATTFAAGVPLVQALDSVAGTSGNRVFKQAVERIRQQVASGM
QLHFAMRASGVFPGMAVQMTAIGEESGTLDHLLEKVATHYEVEVDHLVDSLTRLMEPLIMVLLGSIVGALVVAMYLPVFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=647474 L1O02_RS04685 WP_235759623.1 994339..995556(-) (pilC) [Pseudomonas sp. BC42]
ATGGCGGCAAAAGCTCCCACGACGAGTGTCTATCTCTGGCACGGCATCGACGGCCAGGGCCAGGTGATGCACGGCGAACT
GAGCGCTGCCAACCCGGGACTGATCAGGGCCCGGTTGCGCAAGCAGGGCATCACCCCGACCCGGGTGCGCCGCAAGCCAA
GGGCCTGGCCTCGACTGGGCCAAGGGATCAGCCCCCGGGAGATCGCCCTGTTCACTCGCCAACTGGCCACGTTGATGCAG
GCCGGGGTGCCGCTGCTGCAGGCCTTCGACATCATTGCCGAAGGCTTTGAACAGCCCCTGATGCGCCAGCTGCTGGCCAG
CCTCAAGCGCGAAATCGAGGCCGGTTCCAGCCTGGCGAGCGCACTGCGCCGGCATCCACGCCACTTTGATGCGCTGTACT
GCAACCTGGTGGATGCCGGCGAGCAGGCCGGGGCCCTGGACACGCTGCTGGAACGTGTCGCGACCCACAAGGAAAAGAGC
GAAAACCTCAAGACCCGGGTAAAGCAAGCCATGGTCTATCCGCTGGCGGTGATCGGCGTGGCAGTCGTCGTCAGCAGCAT
CCTGTTGCTCAAAGTGGTTCCCCAGTTCCAGAGCCTGTTCGCCGGGTTCGACGCCGAGTTGCCGCCGCTCACTCAATGGG
TGATCAACCTCTCCCAGGTGCTCCAGCGCCACGGCGGACTCTTGCTCGCCGCCAGCCTGCTGGTCGGTGTCGGCCTGATC
CAGGCCTATCGACGCTCGGCACGCCTGCGGGACACGGTGGATGTGGGGCTGCTGCGCTTGCCCCTGGCCGGCCCCTTGCT
GCAAAAATCCGCCGTGGCGCGCTATGCCCGAACCCTGGCGACCACCTTCGCTGCCGGGGTGCCCCTGGTGCAGGCTCTGG
ACTCGGTGGCCGGAACCAGTGGCAATCGGGTCTTCAAGCAAGCGGTGGAGCGCATTCGCCAACAGGTGGCCAGCGGCATG
CAATTGCACTTTGCCATGCGCGCCAGCGGGGTCTTCCCCGGCATGGCGGTCCAGATGACCGCCATCGGTGAAGAGTCCGG
AACCCTGGACCACTTGCTGGAAAAGGTCGCGACCCACTATGAAGTCGAGGTGGACCACCTGGTGGACAGCCTGACCCGTC
TCATGGAGCCGTTGATCATGGTGCTTCTGGGCAGTATCGTCGGCGCCCTGGTGGTGGCCATGTACCTGCCTGTCTTTCAA
CTCGGTACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.272

100

0.583
  pilC Acinetobacter baylyi ADP1

52.323

100

0.528
  pilC Acinetobacter baumannii D1279779

51.98

99.753

0.519
  pilC Legionella pneumophila strain ERS1305867

46.683

100

0.469
  pilC Vibrio campbellii strain DS40M4

40.988

100

0.41
  pilG Neisseria gonorrhoeae MS11

42.857

95.062

0.407
  pilC Vibrio cholerae strain A1552

41.476

97.037

0.402
  pilG Neisseria meningitidis 44/76-A

42.078

95.062

0.4
  pilC Thermus thermophilus HB27

37.093

98.519

0.365