Detailed information NTG0647473

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L1O02_RS04680
• Genome accession: NZ_CP091067
• Coordinates: 993464..994336 (-)
• Length: 290 a.a.
• NCBI ID: WP_235759621.1
• Uniprot ID: -
• Organism: Pseudomonas sp. BC42
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 988464..999336

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L1O02_RS04640 (L1O02_04640)	-	988695..989993 (-)	1299	WP_060841146.1	NAD(P)/FAD-dependent oxidoreductase	-
L1O02_RS04645 (L1O02_04645)	-	990054..990227 (-)	174	WP_060841145.1	DUF3094 family protein	-
L1O02_RS04650 (L1O02_04650)	-	990416..991045 (-)	630	WP_060841144.1	DUF1780 domain-containing protein	-
L1O02_RS04655 (L1O02_04655)	-	991192..991659 (+)	468	WP_235759617.1	FAD/FMN-containing dehydrogenase	-
L1O02_RS04660 (L1O02_04660)	-	991656..992345 (+)	690	WP_235759619.1	energy-coupling factor ABC transporter permease	-
L1O02_RS04665 (L1O02_04665)	-	992409..992624 (+)	216	WP_016968161.1	hypothetical protein	-
L1O02_RS04670 (L1O02_04670)	yacG	992644..992847 (-)	204	WP_060841142.1	DNA gyrase inhibitor YacG	-
L1O02_RS04675 (L1O02_04675)	coaE	992844..993467 (-)	624	WP_060841141.1	dephospho-CoA kinase	-
L1O02_RS04680 (L1O02_04680)	pilD	993464..994336 (-)	873	WP_235759621.1	A24 family peptidase	Machinery gene
L1O02_RS04685 (L1O02_04685)	pilC	994339..995556 (-)	1218	WP_235759623.1	type II secretion system F family protein	Machinery gene
L1O02_RS04690 (L1O02_04690)	-	995878..996294 (+)	417	WP_235759625.1	pilin	-
L1O02_RS04695 (L1O02_04695)	-	996536..996892 (+)	357	WP_060841137.1	BON domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31806.10 Da
• Isoelectric Point: 8.5005

>NTDB_id=647473 L1O02_RS04680 WP_235759621.1 993464..994336(-) (pilD) [Pseudomonas sp. BC42]
MSLTKVLTLNPLAFVLAALILGLLVGSFLNVLVWRLPKMLERDWRAQAHEVLGLPPEPAGAPYNLLLPHSQCPHCTQPIR
PWENIPLLSYLCLRGRCRHCKAAISPRYPLTELACGLISAFVAWHFGFGWQAGLLLILSWGLIAMSLIDADHQLLPDVLV
LPLLWLGLIANSFGLLVSLGDALWGAVLGYLSLWSVFWLFKLLTGKDGMGHGDFKLLAMLGAWGGWQVLPLTLLLSSLVG
AIIGTLMLRLNRAKTSTPIPFGPFLAIAGWIALLWGGQMTDFYLQAVGFQ

Nucleotide

• Length: 873 bp

>NTDB_id=647473 L1O02_RS04680 WP_235759621.1 993464..994336(-) (pilD) [Pseudomonas sp. BC42]
ATGTCCTTGACTAAAGTCCTGACCCTCAACCCCCTGGCTTTCGTGTTGGCCGCCCTGATACTGGGGCTGCTGGTCGGCAG
CTTCCTCAATGTGCTGGTGTGGCGCCTGCCGAAGATGCTCGAGCGCGACTGGCGCGCCCAGGCCCACGAAGTGCTGGGGC
TGCCCCCGGAGCCGGCAGGGGCGCCCTATAACCTGCTGCTGCCCCATTCCCAGTGTCCGCATTGCACACAGCCAATCCGC
CCCTGGGAGAACATTCCCCTGCTCAGCTATCTGTGCCTGCGGGGCCGTTGCCGCCATTGCAAGGCCGCCATCAGCCCCCG
CTACCCGCTGACCGAGCTGGCCTGCGGGTTGATCTCGGCCTTCGTTGCCTGGCACTTCGGCTTCGGCTGGCAAGCGGGCC
TGTTGCTGATCCTCAGCTGGGGGCTGATCGCCATGAGTCTGATCGATGCCGATCACCAACTGCTGCCCGACGTACTGGTG
TTGCCGTTGCTGTGGCTGGGACTGATCGCCAACAGCTTCGGGCTGCTGGTCAGCCTGGGCGATGCCCTGTGGGGGGCGGT
ACTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGACGGCATGGGGCACGGCGACT
TCAAGCTGCTGGCGATGCTGGGAGCCTGGGGCGGATGGCAGGTGCTGCCGCTGACCCTGCTCCTCTCCTCACTGGTGGGC
GCCATCATCGGCACCCTCATGCTGCGCCTGAACCGGGCCAAAACCTCGACGCCGATCCCCTTTGGCCCTTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATGACCGACTTCTATCTGCAGGCTGTCGGCTTCCAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.704	98.966	0.541
pilD	Vibrio campbellii strain DS40M4	49.825	98.276	0.49
pilD	Acinetobacter baumannii D1279779	49.819	95.517	0.476
pilD	Acinetobacter nosocomialis M2	49.819	95.517	0.476
pilD	Neisseria gonorrhoeae MS11	49.259	93.103	0.459