Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHQ36_RS16840 Genome accession   NZ_CP107860
Coordinates   3720195..3720800 (-) Length   201 a.a.
NCBI ID   WP_330310095.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00500     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3715195..3725800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHQ36_RS16820 (OHQ36_16810) - 3716485..3717423 (+) 939 WP_330304560.1 hypothetical protein -
  OHQ36_RS16825 (OHQ36_16815) - 3717498..3717782 (-) 285 WP_330304561.1 hypothetical protein -
  OHQ36_RS16830 (OHQ36_16820) clpX 3717961..3719247 (-) 1287 WP_330304562.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHQ36_RS16835 (OHQ36_16825) clpP 3719408..3720088 (-) 681 WP_330304563.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHQ36_RS16840 (OHQ36_16830) clpP 3720195..3720800 (-) 606 WP_330310095.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHQ36_RS16845 (OHQ36_16835) tig 3721242..3722642 (-) 1401 WP_330304564.1 trigger factor -
  OHQ36_RS16860 (OHQ36_16850) - 3723272..3723778 (-) 507 WP_330304565.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21265.24 Da        Isoelectric Point: 4.6747

>NTDB_id=647065 OHQ36_RS16840 WP_330310095.1 3720195..3720800(-) (clpP) [Streptomyces sp. NBC_00500]
MPTAAGEPIGGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLASDPDKDIYLYINSPGGSITAGMAIYDTMQYI
KNDVVTIAMGMAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSFHTGQSVEQ
ITKDSDRDRWFDPIEAKEYGLIDDIMPTAAGMPGGGGTGAA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=647065 OHQ36_RS16840 WP_330310095.1 3720195..3720800(-) (clpP) [Streptomyces sp. NBC_00500]
ATGCCCACAGCTGCCGGCGAGCCTATCGGTGGTGGTCTCGGTGACCAGGTCTACAACCGGCTGCTCGGCGAGCGAATCAT
CTTCCTCGGCCAGGCGGTCGACGACGACATCGCCAACAAGATCACTGCGCAGCTGCTGCTCCTTGCCTCCGACCCGGACA
AGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTACATC
AAGAACGACGTGGTGACCATCGCCATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTCAGCGCCGGCACCCCCGGCAA
GCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGCCTCGCGGGCTCCGCGTCGGACATCAAGA
TCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCGGAGCTGACCTCCTTCCACACGGGCCAGAGCGTGGAGCAG
ATCACCAAGGACTCCGACCGCGACCGCTGGTTCGACCCGATCGAGGCCAAGGAGTACGGCCTCATCGACGACATCATGCC
CACCGCTGCCGGTATGCCGGGCGGCGGCGGCACCGGGGCGGCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

55.08

93.035

0.512
  clpP Lactococcus lactis subsp. cremoris KW2

53.439

94.03

0.502
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.91

94.03

0.498
  clpP Streptococcus mutans UA159

51.852

94.03

0.488
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.172

86.567

0.478
  clpP Streptococcus pyogenes JRS4

49.206

94.03

0.463
  clpP Streptococcus pyogenes MGAS315

49.206

94.03

0.463
  clpP Streptococcus pneumoniae TIGR4

48.677

94.03

0.458
  clpP Streptococcus thermophilus LMG 18311

48.677

94.03

0.458
  clpP Streptococcus thermophilus LMD-9

48.677

94.03

0.458
  clpP Streptococcus pneumoniae Rx1

48.677

94.03

0.458
  clpP Streptococcus pneumoniae D39

48.677

94.03

0.458
  clpP Streptococcus pneumoniae R6

48.677

94.03

0.458