Detailed information NTG0647063

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OHQ36_RS16830
• Genome accession: NZ_CP107860
• Coordinates: 3717961..3719247 (-)
• Length: 428 a.a.
• NCBI ID: WP_330304562.1
• Uniprot ID: A0ABW2VPP3
• Organism: Streptomyces sp. NBC_00500
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3712961..3724247

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHQ36_RS16815 (OHQ36_16805)	-	3713724..3716348 (-)	2625	WP_330304559.1	valine--tRNA ligase	-
OHQ36_RS16820 (OHQ36_16810)	-	3716485..3717423 (+)	939	WP_330304560.1	hypothetical protein	-
OHQ36_RS16825 (OHQ36_16815)	-	3717498..3717782 (-)	285	WP_330304561.1	hypothetical protein	-
OHQ36_RS16830 (OHQ36_16820)	clpX	3717961..3719247 (-)	1287	WP_330304562.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OHQ36_RS16835 (OHQ36_16825)	clpP	3719408..3720088 (-)	681	WP_330304563.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHQ36_RS16840 (OHQ36_16830)	clpP	3720195..3720800 (-)	606	WP_330310095.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHQ36_RS16845 (OHQ36_16835)	tig	3721242..3722642 (-)	1401	WP_330304564.1	trigger factor	-
OHQ36_RS16860 (OHQ36_16850)	-	3723272..3723778 (-)	507	WP_330304565.1	hypothetical protein	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 47010.83 Da
• Isoelectric Point: 4.8249

>NTDB_id=647063 OHQ36_RS16830 WP_330304562.1 3717961..3719247(-) (clpX) [Streptomyces sp. NBC_00500]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENSTGQNRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKLIESRAGAKGIGFGATIRSKRELQSKDQFEDVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
ADVVHSNVNPTLIPRDARRGGPGEQKTA

Nucleotide

• Length: 1287 bp

>NTDB_id=647063 OHQ36_RS16830 WP_330304562.1 3717961..3719247(-) (clpX) [Streptomyces sp. NBC_00500]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGTGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGCCCCGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAAGAACTCGCGGAGACGA
GCGAGGTGCGCTGGGAGGAACTTCCCAAGCCCCGCGAGATCTACGAGTTCCTCGAGGGGTACGTGGTCGGCCAGGAGCCG
GCCAAGAAGGCGCTCTCGGTCGCGGTGTACAACCACTACAAGCGGGTCCAGGCCGGTGAGAACAGCACGGGTCAAAACCG
CGACGACGCCATCGAGTTGGCGAAGTCCAACATCCTGCTGCTCGGCCCCACGGGCTCGGGCAAGACGCTCCTGGCCCAGA
CGCTGGCCCGCATGCTCAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCGGGTTATGTCGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTCATCCAGGCGGCGGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACGCGCGATGTGTCCGGCGAGGGCGTCCAACAGGCCC
TGCTGAAGATCCTCGAAGGCACGACGGCCTCGGTCCCGCCCCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGCGGCGCCTTCTCGGGCCTGGAGAAGCTCATCGAGTCCCGCGCCGGCGC
GAAGGGTATCGGCTTCGGTGCGACGATCCGCTCGAAGCGGGAGCTGCAGTCCAAGGACCAGTTCGAGGACGTCATGCCCG
AGGACCTGGTCAAGTTCGGCATGATCCCCGAGTTCATCGGCCGCCTCCCCGTCATCACCTCGGTCCACAACCTGGACCGC
GAGGCCCTGCTCCAGATCCTGATCGAGCCGCGCAACGCCCTGGTGAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAACTCGACTTCGAGCGCGAGGCGTTGGAGGCCATCGCCGACCAGGCCATCCTCCGCCAGACCGGAGCGCGAGGCCTGC
GCGCCATCATGGAGGAAGTCCTCATGTCCGTGATGTACGAGGTCCCGTCCCGCAAGGACGTCGCCCGCGTCGTCATCACG
GCGGACGTCGTTCACTCGAACGTGAACCCGACGCTGATTCCGCGGGACGCTCGCCGCGGGGGGCCGGGGGAGCAGAAGAC
GGCGTAG

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.438	93.925	0.586
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.258	96.028	0.521