Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHQ36_RS16835 Genome accession   NZ_CP107860
Coordinates   3719408..3720088 (-) Length   226 a.a.
NCBI ID   WP_330304563.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00500     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3714408..3725088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHQ36_RS16820 (OHQ36_16810) - 3716485..3717423 (+) 939 WP_330304560.1 hypothetical protein -
  OHQ36_RS16825 (OHQ36_16815) - 3717498..3717782 (-) 285 WP_330304561.1 hypothetical protein -
  OHQ36_RS16830 (OHQ36_16820) clpX 3717961..3719247 (-) 1287 WP_330304562.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHQ36_RS16835 (OHQ36_16825) clpP 3719408..3720088 (-) 681 WP_330304563.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHQ36_RS16840 (OHQ36_16830) clpP 3720195..3720800 (-) 606 WP_330310095.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHQ36_RS16845 (OHQ36_16835) tig 3721242..3722642 (-) 1401 WP_330304564.1 trigger factor -
  OHQ36_RS16860 (OHQ36_16850) - 3723272..3723778 (-) 507 WP_330304565.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24983.42 Da        Isoelectric Point: 4.6288

>NTDB_id=647064 OHQ36_RS16835 WP_330304563.1 3719408..3720088(-) (clpP) [Streptomyces sp. NBC_00500]
MNDFPGSGLYARTQAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNSSVV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=647064 OHQ36_RS16835 WP_330304563.1 3719408..3720088(-) (clpP) [Streptomyces sp. NBC_00500]
GTGAACGACTTCCCCGGCAGCGGCCTCTACGCCCGCACGCAGGCCGAGTACACCGGTCCTCGCGCGGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCGTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGTGACATCTCGGTCTACATCAACAGCCCCGGTGGCTCCTTCACGGCACTCACTGCGATTTACGACACGATGCAGTT
CGTGAAGCCGGACATTCAGACGGTCTGCATGGGCCAGGCCGCCTCGGCCGCCGCGATCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCGCTTCCGAACGCCCGCGTGCTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGCCAGGTCTCGGAC
CTCGAAATCGCCGCGAACGAGATCCTCCGGATGCGTGCGCAGCTGGAAGACATGCTGGCCAAGCACTCGACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTGGCGTACGGCCTGATCGACCAGA
TCATCTCTACCCGCAAGATGAACAACTCGTCCGTCGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.221

88.053

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385