Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   L0B52_RS04965 Genome accession   NZ_CP090975
Coordinates   1067235..1068389 (-) Length   384 a.a.
NCBI ID   WP_235063644.1    Uniprot ID   -
Organism   Suttonella sp. R2A3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1062235..1073389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0B52_RS09690 - 1062494..1062631 (+) 138 Protein_966 NINE protein -
  L0B52_RS04940 (L0B52_04940) - 1062676..1063323 (+) 648 WP_235063639.1 histidine phosphatase family protein -
  L0B52_RS04945 (L0B52_04945) aroG 1063351..1064409 (-) 1059 WP_235063640.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  L0B52_RS04950 (L0B52_04950) - 1064506..1065771 (+) 1266 WP_235063641.1 acetyl-CoA C-acyltransferase -
  L0B52_RS04955 (L0B52_04955) coaE 1065772..1066371 (-) 600 WP_235063642.1 dephospho-CoA kinase -
  L0B52_RS04960 (L0B52_04960) pilD 1066384..1067235 (-) 852 WP_235063643.1 A24 family peptidase Machinery gene
  L0B52_RS04965 (L0B52_04965) pilC 1067235..1068389 (-) 1155 WP_235063644.1 type II secretion system F family protein Machinery gene
  L0B52_RS04970 (L0B52_04970) pilB 1068466..1070127 (-) 1662 WP_409202322.1 type IV-A pilus assembly ATPase PilB Machinery gene
  L0B52_RS04975 (L0B52_04975) - 1070163..1070738 (-) 576 WP_235063646.1 aminodeoxychorismate/anthranilate synthase component II -
  L0B52_RS04980 (L0B52_04980) recO 1070768..1071430 (+) 663 WP_235063647.1 DNA repair protein RecO -
  L0B52_RS04985 (L0B52_04985) erpA 1071427..1071777 (-) 351 WP_235063648.1 iron-sulfur cluster insertion protein ErpA -
  L0B52_RS04990 (L0B52_04990) - 1071850..1073139 (-) 1290 WP_235063649.1 DUF2254 domain-containing protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41980.35 Da        Isoelectric Point: 9.3029

>NTDB_id=646834 L0B52_RS04965 WP_235063644.1 1067235..1068389(-) (pilC) [Suttonella sp. R2A3]
MNGTMDAQNDAILKATLSKQGLTHVSVKEKPKPIYESKGRIKSKDVLFFTRQMATMLRAGMPALRALDLVGQSIEKPKKM
RDMVFDIHDRIQNGATFAEALAAHPIQFDSLYTSLVAAGEDAGMLESTMDNIALNMEKGEATKKKVKKALTYPAIVMIFA
VVVTAILLIKVVPVFADFFESNGGELPAVTQMVVSISDFMVNYGVYILVVLVALVAAFIYAKKRNKRLQEGANKFAFKIP
IIGGILKCGANARFARTLATLFNAGVPMLRGLSSTAPATGSPIYEAAVYDIRENVQNGQQLSFAMKNTNLFPTIAVQMTA
IGEESGNLGEMLGRVANFYEEELDWRIDNLTSMIEPFIMAFLAVVVGGLLIAMYMPIFNLGSMF

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=646834 L0B52_RS04965 WP_235063644.1 1067235..1068389(-) (pilC) [Suttonella sp. R2A3]
ATGAACGGCACAATGGATGCGCAAAATGATGCGATCCTCAAGGCCACACTCAGTAAACAGGGGTTGACGCATGTCAGCGT
AAAAGAAAAGCCTAAGCCGATTTATGAAAGTAAGGGGCGGATTAAATCTAAAGACGTGCTCTTCTTTACCCGGCAAATGG
CGACGATGTTGCGTGCGGGGATGCCCGCACTGCGCGCGCTTGATTTGGTCGGGCAAAGTATTGAAAAACCGAAAAAAATG
CGCGACATGGTGTTTGATATCCATGACCGTATTCAAAACGGCGCCACCTTTGCTGAAGCACTTGCCGCCCACCCAATACA
ATTTGATAGCCTATACACCAGTTTGGTTGCGGCCGGTGAAGATGCGGGTATGCTAGAAAGTACCATGGACAACATTGCGC
TGAACATGGAAAAAGGTGAAGCGACCAAGAAGAAAGTTAAAAAGGCGCTCACTTACCCAGCAATCGTGATGATTTTCGCA
GTGGTGGTTACCGCCATCTTGTTGATTAAAGTGGTGCCGGTTTTTGCAGATTTTTTTGAATCTAATGGTGGCGAGTTACC
CGCTGTCACACAAATGGTGGTCAGTATTTCTGATTTCATGGTCAATTATGGGGTATATATTTTAGTGGTTTTAGTGGCTT
TGGTGGCTGCCTTTATATATGCAAAGAAACGCAATAAACGCCTTCAAGAAGGCGCCAATAAATTTGCGTTTAAAATCCCG
ATTATTGGTGGGATCTTAAAATGTGGGGCGAATGCGCGCTTTGCACGAACTTTGGCTACGCTGTTTAACGCCGGTGTGCC
GATGTTGCGCGGCCTGTCTTCTACAGCCCCCGCCACCGGCAGCCCTATTTATGAGGCAGCAGTTTATGATATTCGTGAAA
ATGTGCAGAACGGTCAGCAGCTCAGTTTTGCGATGAAAAATACCAACCTGTTTCCAACGATTGCGGTGCAAATGACCGCT
ATTGGTGAAGAGTCGGGTAATCTCGGGGAAATGCTCGGACGGGTGGCGAATTTTTACGAAGAAGAACTCGACTGGCGTAT
CGATAACCTGACCTCGATGATTGAGCCGTTTATCATGGCGTTTCTTGCGGTTGTCGTTGGTGGCCTCTTGATCGCGATGT
ATATGCCAATCTTTAACTTAGGTTCAATGTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(254-376)

Type II secretion system (T2SS), protein F (T2SSF)

(49-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

49.61

100

0.497
  pilC Acinetobacter baylyi ADP1

48.831

100

0.49
  pilC Legionella pneumophila strain ERS1305867

45.953

99.74

0.458
  pilC Pseudomonas stutzeri DSM 10701

45.431

99.74

0.453
  pilG Neisseria meningitidis 44/76-A

39.948

99.74

0.398
  pilG Neisseria gonorrhoeae MS11

39.687

99.74

0.396
  pilC Vibrio campbellii strain DS40M4

38.082

95.052

0.362