Detailed information NTG0646833

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L0B52_RS04960
• Genome accession: NZ_CP090975
• Coordinates: 1066384..1067235 (-)
• Length: 283 a.a.
• NCBI ID: WP_235063643.1
• Uniprot ID: -
• Organism: Suttonella sp. R2A3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1061384..1072235

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L0B52_RS04930 (L0B52_04930)	groES	1061972..1062259 (-)	288	WP_235063637.1	co-chaperone GroES	-
L0B52_RS09690	-	1062494..1062631 (+)	138	Protein_966	NINE protein	-
L0B52_RS04940 (L0B52_04940)	-	1062676..1063323 (+)	648	WP_235063639.1	histidine phosphatase family protein	-
L0B52_RS04945 (L0B52_04945)	aroG	1063351..1064409 (-)	1059	WP_235063640.1	3-deoxy-7-phosphoheptulonate synthase AroG	-
L0B52_RS04950 (L0B52_04950)	-	1064506..1065771 (+)	1266	WP_235063641.1	acetyl-CoA C-acyltransferase	-
L0B52_RS04955 (L0B52_04955)	coaE	1065772..1066371 (-)	600	WP_235063642.1	dephospho-CoA kinase	-
L0B52_RS04960 (L0B52_04960)	pilD	1066384..1067235 (-)	852	WP_235063643.1	A24 family peptidase	Machinery gene
L0B52_RS04965 (L0B52_04965)	pilC	1067235..1068389 (-)	1155	WP_235063644.1	type II secretion system F family protein	Machinery gene
L0B52_RS04970 (L0B52_04970)	pilB	1068466..1070127 (-)	1662	WP_409202322.1	type IV-A pilus assembly ATPase PilB	Machinery gene
L0B52_RS04975 (L0B52_04975)	-	1070163..1070738 (-)	576	WP_235063646.1	aminodeoxychorismate/anthranilate synthase component II	-
L0B52_RS04980 (L0B52_04980)	recO	1070768..1071430 (+)	663	WP_235063647.1	DNA repair protein RecO	-
L0B52_RS04985 (L0B52_04985)	erpA	1071427..1071777 (-)	351	WP_235063648.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 31154.23 Da
• Isoelectric Point: 4.9714

>NTDB_id=646833 L0B52_RS04960 WP_235063643.1 1066384..1067235(-) (pilD) [Suttonella sp. R2A3]
MLSIEFLQSAPGIILVGLLGLVVGSFLNVVIYRLPHMMERDEQAYARAVVEGVDPSEVKEGRFNLFYPPSACPHCGHGIR
AWQNIPILSYLVQRGRCTSCGESISLRYLVVELLTMVLSILVVLQYPEPMQLGFALIFTWTLIALVFIDAESQLLPDILT
LPLMWLGIIAGLLGLFVSLEESVIGAMVGYMSLWVVYWAFKLVTGREGMGYGDFKLLAALCAFQGAYMLPIILFMAAICG
LIFALISRLGRGIPMAFGPYLAAAGWLVFMYGNSVEALLYGSY

Nucleotide

• Length: 852 bp

>NTDB_id=646833 L0B52_RS04960 WP_235063643.1 1066384..1067235(-) (pilD) [Suttonella sp. R2A3]
ATGTTATCCATCGAATTTTTACAAAGCGCACCAGGAATCATCTTAGTCGGTCTGCTCGGCTTGGTGGTTGGAAGCTTCCT
AAACGTGGTGATTTATCGTCTGCCGCATATGATGGAACGAGATGAACAAGCTTATGCGCGCGCCGTCGTTGAAGGGGTGG
ATCCCTCTGAAGTTAAAGAAGGGCGTTTTAATTTGTTTTACCCGCCTTCAGCGTGTCCACATTGTGGGCATGGCATCCGT
GCCTGGCAAAATATTCCCATCTTGAGCTATTTGGTGCAACGTGGTCGCTGCACCAGCTGTGGTGAGTCGATTTCATTACG
CTATCTAGTGGTTGAGTTGCTGACTATGGTGCTGAGTATATTGGTGGTTTTGCAGTATCCAGAGCCGATGCAGCTCGGTT
TCGCTTTGATATTTACATGGACATTGATCGCGTTAGTGTTTATCGACGCTGAAAGCCAATTATTGCCCGATATTCTCACT
TTGCCACTGATGTGGCTAGGCATCATCGCCGGGCTTTTAGGGCTATTTGTTTCCTTGGAGGAGAGTGTCATTGGTGCAAT
GGTCGGCTATATGAGTTTGTGGGTAGTCTATTGGGCGTTTAAGCTCGTGACTGGCCGTGAAGGTATGGGATATGGCGATT
TTAAGCTACTGGCTGCGCTGTGTGCGTTTCAAGGCGCGTATATGTTGCCGATTATTCTCTTTATGGCCGCGATTTGTGGG
CTGATTTTTGCGCTGATTAGTCGCTTAGGTCGCGGGATACCGATGGCCTTTGGCCCTTATCTTGCCGCAGCCGGCTGGTT
GGTGTTTATGTATGGCAACAGCGTTGAAGCGTTGCTTTATGGTTCGTATTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.929	95.053	0.484
pilD	Neisseria gonorrhoeae MS11	50.951	92.933	0.474
pilD	Vibrio campbellii strain DS40M4	46.667	95.406	0.445
pilD	Acinetobacter baumannii D1279779	44.803	98.587	0.442
pilD	Acinetobacter nosocomialis M2	44.444	98.587	0.438