Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG266_RS29255 Genome accession   NZ_CP107799
Coordinates   6629083..6629763 (+) Length   226 a.a.
NCBI ID   WP_371549185.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00554 strain NBC 00554     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6624083..6634763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG266_RS29230 (OG266_29225) - 6625667..6625861 (+) 195 WP_266462266.1 hypothetical protein -
  OG266_RS29245 (OG266_29240) tig 6626532..6627920 (+) 1389 WP_371549183.1 trigger factor -
  OG266_RS29250 (OG266_29245) clpP 6628359..6628964 (+) 606 WP_266464267.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG266_RS29255 (OG266_29250) clpP 6629083..6629763 (+) 681 WP_371549185.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG266_RS29260 (OG266_29255) clpX 6629924..6631210 (+) 1287 WP_266462273.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG266_RS29265 (OG266_29260) - 6631278..6632237 (-) 960 WP_371549187.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24994.44 Da        Isoelectric Point: 4.6288

>NTDB_id=646458 OG266_RS29255 WP_371549185.1 6629083..6629763(+) (clpP) [Streptomyces sp. NBC_00554 strain NBC 00554]
MNDYPGSGLFARTQAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNNAVV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=646458 OG266_RS29255 WP_371549185.1 6629083..6629763(+) (clpP) [Streptomyces sp. NBC_00554 strain NBC 00554]
GTGAACGACTACCCCGGCAGCGGCCTCTTCGCCCGCACGCAGGCCGAGTACACCGGTCCTCGCGCGGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGCGATATTTCGGTCTACATCAACAGCCCCGGTGGCTCATTCACGGCGCTCACGGCGATTTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCAGCTTCGGCCGCCGCGATCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCGCTTCCGAACGCCCGTGTGCTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGCCAGGTCTCGGAC
CTCGAAATCGCTGCGAACGAGATCCTCCGGATGCGTGCGCAGCTGGAAGACATGCTGGCCAAGCACTCGACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACCGCTGAGGACGCGCTGGCGTACGGCTTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACAACGCGGTCGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

44.776

88.938

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.781

88.938

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385