Detailed information NTG0646459

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OG266_RS29260
• Genome accession: NZ_CP107799
• Coordinates: 6629924..6631210 (+)
• Length: 428 a.a.
• NCBI ID: WP_266462273.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00554 strain NBC 00554
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 6624924..6636210

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG266_RS29230 (OG266_29225)	-	6625667..6625861 (+)	195	WP_266462266.1	hypothetical protein	-
OG266_RS29245 (OG266_29240)	tig	6626532..6627920 (+)	1389	WP_371549183.1	trigger factor	-
OG266_RS29250 (OG266_29245)	clpP	6628359..6628964 (+)	606	WP_266464267.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG266_RS29255 (OG266_29250)	clpP	6629083..6629763 (+)	681	WP_371549185.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG266_RS29260 (OG266_29255)	clpX	6629924..6631210 (+)	1287	WP_266462273.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG266_RS29265 (OG266_29260)	-	6631278..6632237 (-)	960	WP_371549187.1	hypothetical protein	-
OG266_RS29270 (OG266_29265)	-	6632374..6634998 (+)	2625	WP_371549188.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46926.75 Da
• Isoelectric Point: 4.7838

>NTDB_id=646459 OG266_RS29260 WP_266462273.1 6629924..6631210(+) (clpX) [Streptomyces sp. NBC_00554 strain NBC 00554]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENSTGQNREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKLIESRAGAKGIGFGATIRSKREIEAKDQFEDVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFESEALEAIADQAILRKTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
ADVVHSNVNPTLIPRDSRGRGPGEQKTA

Nucleotide

• Length: 1287 bp

>NTDB_id=646459 OG266_RS29260 WP_266462273.1 6629924..6631210(+) (clpX) [Streptomyces sp. NBC_00554 strain NBC 00554]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGTGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGCCCTGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAAGAACTCGCGGAGACGA
GCGAGGTGCGCTGGGAGGAACTTCCCAAGCCTCGCGAGATCTACGAGTTCCTCGAGGGGTACGTCGTAGGCCAGGAGCCG
GCCAAGAAGGCGCTCTCGGTCGCGGTGTACAACCACTACAAGCGCGTCCAGGCCGGTGAGAACAGCACGGGTCAGAACCG
CGAGGACGCCATCGAGTTGGCGAAGTCCAACATCCTGCTCCTCGGCCCGACGGGTTCCGGCAAGACCCTTCTCGCGCAGA
CCCTGGCCCGCATGCTGAACGTTCCGTTCGCCATCGCGGACGCGACGGCGCTGACGGAGGCCGGGTACGTCGGCGAGGAC
GTCGAGAACATTCTGCTGAAGCTCATCCAGGCAGCGGACTACGACGTCAAGAAGGCCGAGACCGGCATCATCTACATCGA
CGAGATCGACAAGGTCGCGCGGAAGAGCGAGAACCCCTCGATCACCCGCGACGTGTCCGGCGAGGGCGTCCAGCAGGCCC
TGCTGAAGATCCTCGAAGGCACCACGGCCTCGGTCCCGCCGCAGGGCGGACGCAAGCACCCGCATCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGCGGCGCCTTCGCGGGCCTGGAGAAGCTCATCGAGTCGCGGGCCGGCGC
CAAGGGCATCGGCTTCGGCGCGACGATCCGCTCGAAGCGGGAGATCGAGGCCAAGGACCAGTTCGAGGACGTCATGCCCG
AGGACCTGGTCAAGTTCGGCATGATCCCCGAGTTCATCGGCCGCCTCCCCGTCATCACCTCGGTCCACAACCTGGACCGC
GAAGCCCTTCTCCAGATCCTCGTCGAGCCCCGCAACGCACTGGTGAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAGCTGGACTTCGAGAGCGAGGCCCTCGAAGCCATCGCCGACCAGGCCATCCTCCGCAAGACCGGCGCCCGCGGTCTGC
GCGCCATCATGGAGGAAGTCCTCATGTCCGTGATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTCGTCATCACC
GCGGACGTCGTCCACTCGAACGTGAACCCGACACTGATCCCGCGGGACTCGCGGGGCCGCGGCCCGGGCGAGCAGAAGAC
GGCGTAG

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.531	94.159	0.589
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.501	96.028	0.523