Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG266_RS29250 Genome accession   NZ_CP107799
Coordinates   6628359..6628964 (+) Length   201 a.a.
NCBI ID   WP_266464267.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00554 strain NBC 00554     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6623359..6633964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG266_RS29220 (OG266_29215) - 6623382..6623834 (+) 453 WP_266462260.1 HD domain-containing protein -
  OG266_RS29225 (OG266_29220) - 6623850..6625055 (-) 1206 WP_371549181.1 acyltransferase family protein -
  OG266_RS29230 (OG266_29225) - 6625667..6625861 (+) 195 WP_266462266.1 hypothetical protein -
  OG266_RS29245 (OG266_29240) tig 6626532..6627920 (+) 1389 WP_371549183.1 trigger factor -
  OG266_RS29250 (OG266_29245) clpP 6628359..6628964 (+) 606 WP_266464267.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG266_RS29255 (OG266_29250) clpP 6629083..6629763 (+) 681 WP_371549185.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG266_RS29260 (OG266_29255) clpX 6629924..6631210 (+) 1287 WP_266462273.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG266_RS29265 (OG266_29260) - 6631278..6632237 (-) 960 WP_371549187.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21233.24 Da        Isoelectric Point: 4.7892

>NTDB_id=646457 OG266_RS29250 WP_266464267.1 6628359..6628964(+) (clpP) [Streptomyces sp. NBC_00554 strain NBC 00554]
MPTAAGDPIGGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLASDPEKDIFLYINSPGGSITAGMAIYDTMQYI
KNDVVTIAMGMAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSFHTGQTVEQ
ITRDSDRDRWFDPVEAKAYGLIDDIMPTAAAMPGGGGTGAA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=646457 OG266_RS29250 WP_266464267.1 6628359..6628964(+) (clpP) [Streptomyces sp. NBC_00554 strain NBC 00554]
ATGCCCACAGCTGCCGGCGACCCTATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGATCAT
CTTCCTCGGCCAGGCGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGTTGCTGCTCCTTGCCTCCGACCCGGAGA
AGGACATCTTCCTCTACATCAACAGCCCCGGCGGCTCGATCACTGCCGGTATGGCGATCTACGACACCATGCAGTACATC
AAGAACGATGTGGTGACGATCGCCATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTCAGCGCCGGCACCCCCGGCAA
GCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCGGCCGGCCTCGCCGGCTCCGCGTCGGACATCAAGA
TCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGGATGGCGGAGCTGACCTCCTTCCACACCGGCCAGACCGTGGAGCAG
ATCACCCGCGACTCGGACCGCGACCGCTGGTTCGACCCGGTCGAGGCCAAGGCGTACGGCCTCATCGACGACATCATGCC
CACCGCTGCCGCTATGCCGGGCGGCGGCGGCACCGGGGCGGCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

55.615

93.035

0.517
  clpP Lactococcus lactis subsp. cremoris KW2

51.323

94.03

0.483
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.794

94.03

0.478
  clpP Streptococcus mutans UA159

54.286

87.065

0.473
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.448

86.567

0.463
  clpP Streptococcus pyogenes MGAS315

52.601

86.07

0.453
  clpP Streptococcus pyogenes JRS4

52.601

86.07

0.453
  clpP Streptococcus thermophilus LMG 18311

50.867

86.07

0.438
  clpP Streptococcus thermophilus LMD-9

50.867

86.07

0.438
  clpP Streptococcus pneumoniae Rx1

50.289

86.07

0.433
  clpP Streptococcus pneumoniae D39

50.289

86.07

0.433
  clpP Streptococcus pneumoniae R6

50.289

86.07

0.433
  clpP Streptococcus pneumoniae TIGR4

50.289

86.07

0.433