Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG812_RS20175 Genome accession   NZ_CP107784
Coordinates   4322868..4323533 (+) Length   221 a.a.
NCBI ID   WP_161145967.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00566     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4317868..4328533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG812_RS20145 (OG812_20140) - 4318130..4319332 (-) 1203 WP_329011163.1 acyltransferase family protein -
  OG812_RS20150 (OG812_20145) - 4319775..4319969 (+) 195 WP_161145964.1 hypothetical protein -
  OG812_RS20165 (OG812_20160) tig 4320563..4321936 (+) 1374 WP_329011161.1 trigger factor -
  OG812_RS20170 (OG812_20165) clpP 4322192..4322797 (+) 606 WP_202494535.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG812_RS20175 (OG812_20170) clpP 4322868..4323533 (+) 666 WP_161145967.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG812_RS20180 (OG812_20175) clpX 4323704..4324990 (+) 1287 WP_217465538.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG812_RS20185 (OG812_20180) - 4325053..4326120 (-) 1068 WP_329011160.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24530.94 Da        Isoelectric Point: 4.5730

>NTDB_id=646217 OG812_RS20175 WP_161145967.1 4322868..4323533(+) (clpP) [Streptomyces sp. NBC_00566]
MSNFPGAASGMYEGPRPDSRYIIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDIS
IYINSPGGDMTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNSRVLIHQPAGSTGRGQLSDLEIIA
KEFTRMRDQLEDMLAKHSNQPLDKIREDIERDKILTAEEALEYGLVDQIISTRKMNNEAVR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=646217 OG812_RS20175 WP_161145967.1 4322868..4323533(+) (clpP) [Streptomyces sp. NBC_00566]
ATGAGCAACTTCCCCGGCGCCGCCAGCGGCATGTACGAGGGCCCCCGCCCCGACAGCCGTTACATCATCCCGCGCTTCGT
CGAACGCACTTCCCAGGGCGTCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCCTGGGCGTCC
AGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTCCTCTGCCTGGAGTCGATGGACCCCGACCGGGACATCTCG
ATCTACATCAACAGCCCCGGCGGTGACATGACGGCCCTGACGGCCATCTACGACACCATGCAGTTCGTGAAGCCCGACAT
CCAGACGGTGTGCATGGGCCAGGCCGCCTCGGCCGCGGCCATCCTGCTCGCCGCGGGCACCCCCGGCAAGCGCATGGCGC
TGCCGAACTCGCGCGTGCTGATCCACCAGCCGGCGGGCTCCACCGGGCGCGGTCAGCTCTCCGACCTGGAGATCATCGCC
AAGGAGTTCACCCGGATGCGCGACCAGCTCGAGGACATGCTGGCCAAGCACTCCAACCAGCCGCTGGACAAGATCCGCGA
GGACATCGAGCGCGACAAGATCCTCACGGCCGAGGAGGCGCTGGAGTACGGTCTGGTCGACCAGATCATCTCCACCCGCA
AGATGAACAACGAAGCGGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(32-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.158

85.973

0.457
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.323

85.52

0.439
  clpP Streptococcus mutans UA159

44.444

89.593

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

44.388

88.688

0.394
  clpP Streptococcus thermophilus LMD-9

44.615

88.235

0.394
  clpP Streptococcus thermophilus LMG 18311

44.615

88.235

0.394
  clpP Streptococcus pyogenes MGAS315

43.434

89.593

0.389
  clpP Streptococcus pyogenes JRS4

43.434

89.593

0.389
  clpP Streptococcus pneumoniae R6

43.367

88.688

0.385
  clpP Streptococcus pneumoniae Rx1

43.367

88.688

0.385
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.367

88.688

0.385
  clpP Streptococcus pneumoniae TIGR4

43.367

88.688

0.385
  clpP Streptococcus pneumoniae D39

43.367

88.688

0.385