Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG812_RS20170 Genome accession   NZ_CP107784
Coordinates   4322192..4322797 (+) Length   201 a.a.
NCBI ID   WP_202494535.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00566     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4317192..4327797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG812_RS20140 (OG812_20135) - 4317661..4318119 (+) 459 WP_330236428.1 HD domain-containing protein -
  OG812_RS20145 (OG812_20140) - 4318130..4319332 (-) 1203 WP_329011163.1 acyltransferase family protein -
  OG812_RS20150 (OG812_20145) - 4319775..4319969 (+) 195 WP_161145964.1 hypothetical protein -
  OG812_RS20165 (OG812_20160) tig 4320563..4321936 (+) 1374 WP_329011161.1 trigger factor -
  OG812_RS20170 (OG812_20165) clpP 4322192..4322797 (+) 606 WP_202494535.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG812_RS20175 (OG812_20170) clpP 4322868..4323533 (+) 666 WP_161145967.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG812_RS20180 (OG812_20175) clpX 4323704..4324990 (+) 1287 WP_217465538.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG812_RS20185 (OG812_20180) - 4325053..4326120 (-) 1068 WP_329011160.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21284.16 Da        Isoelectric Point: 4.5749

>NTDB_id=646216 OG812_RS20170 WP_202494535.1 4322192..4322797(+) (clpP) [Streptomyces sp. NBC_00566]
MPSAAGEPSIGGGLGDQVYNRLLNERIIFLGQQVDDDIANKITAQLLLLAADPEKDIYLYINSPGGSVTAGMAIYDTMQY
IPNDVVTIAMGMAASMGQFLLTGGAAGKRFALPHADIMMHQGSAGLGGTVSDIKIQAEYLLRTKKRMSELTAQHSGQTVE
AIIRDGDRDRWFTPEEAKEYGLIDEIITHASGVPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=646216 OG812_RS20170 WP_202494535.1 4322192..4322797(+) (clpP) [Streptomyces sp. NBC_00566]
ATGCCCTCCGCCGCCGGCGAGCCCTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCAACGAGCGGAT
CATCTTCCTCGGCCAGCAGGTCGACGACGACATCGCCAACAAGATCACCGCACAGTTGCTCCTTCTCGCGGCCGACCCCG
AGAAGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGGTGACGGCCGGCATGGCGATCTACGACACCATGCAGTAC
ATCCCGAACGACGTGGTCACGATCGCCATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTCACCGGCGGCGCCGCGGG
CAAGCGCTTCGCGCTGCCGCACGCGGACATCATGATGCACCAGGGCTCCGCGGGCCTCGGCGGTACGGTCTCGGACATCA
AGATCCAGGCCGAGTACCTGCTGCGTACCAAGAAGCGCATGTCCGAGCTGACCGCCCAGCACTCCGGCCAGACGGTGGAG
GCGATCATCCGCGACGGCGACCGCGACCGCTGGTTCACGCCGGAAGAGGCCAAGGAGTACGGTCTCATCGACGAGATCAT
CACGCACGCCTCGGGTGTCCCGGGAGGCGGCGGCACCGGTGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

56.069

86.07

0.483
  clpP Lactococcus lactis subsp. cremoris KW2

50.532

93.532

0.473
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.351

92.04

0.473
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50

93.532

0.468
  clpP Streptococcus mutans UA159

52

87.065

0.453
  clpP Streptococcus pneumoniae R6

51.412

88.06

0.453
  clpP Streptococcus pneumoniae TIGR4

51.412

88.06

0.453
  clpP Streptococcus pneumoniae D39

51.412

88.06

0.453
  clpP Streptococcus pneumoniae Rx1

51.412

88.06

0.453
  clpP Streptococcus thermophilus LMG 18311

51.429

87.065

0.448
  clpP Streptococcus thermophilus LMD-9

51.429

87.065

0.448
  clpP Streptococcus pyogenes JRS4

52.023

86.07

0.448
  clpP Streptococcus pyogenes MGAS315

52.023

86.07

0.448