Detailed information NTG0646218

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OG812_RS20180
• Genome accession: NZ_CP107784
• Coordinates: 4323704..4324990 (+)
• Length: 428 a.a.
• NCBI ID: WP_217465538.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00566
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 4318704..4329990

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG812_RS20150 (OG812_20145)	-	4319775..4319969 (+)	195	WP_161145964.1	hypothetical protein	-
OG812_RS20165 (OG812_20160)	tig	4320563..4321936 (+)	1374	WP_329011161.1	trigger factor	-
OG812_RS20170 (OG812_20165)	clpP	4322192..4322797 (+)	606	WP_202494535.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG812_RS20175 (OG812_20170)	clpP	4322868..4323533 (+)	666	WP_161145967.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG812_RS20180 (OG812_20175)	clpX	4323704..4324990 (+)	1287	WP_217465538.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG812_RS20185 (OG812_20180)	-	4325053..4326120 (-)	1068	WP_329011160.1	hypothetical protein	-
OG812_RS20190 (OG812_20185)	-	4326258..4328882 (+)	2625	WP_329011159.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46886.78 Da
• Isoelectric Point: 4.8852

>NTDB_id=646218 OG812_RS20180 WP_217465538.1 4323704..4324990(+) (clpX) [Streptomyces sp. NBC_00566]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLESYVVGQEA
AKKALSVAVYNHYKRVQAGENGGGQSREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKRELAAKDIFEDIMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLKILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
ADVVHSNVNPTLIPRDSRGRGQGEQKTA

Nucleotide

• Length: 1287 bp

>NTDB_id=646218 OG812_RS20180 WP_217465538.1 4323704..4324990(+) (clpX) [Streptomyces sp. NBC_00566]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGTCCCGGTGTATACATCTGCGACGAGTGCATCGACCTGTGCAACGAGATCATCGAGGAAGAGCTCGCCGAGACGA
GCGAGGTGCGCTGGGAGGAACTCCCCAAGCCCCGCGAGATCTACGAGTTCCTCGAGAGCTACGTGGTCGGCCAGGAAGCG
GCCAAGAAGGCCCTCTCCGTCGCGGTGTACAACCACTACAAGCGGGTCCAGGCCGGTGAGAACGGCGGCGGCCAAAGCCG
CGAGGACGCCATCGAGTTGGCCAAGTCCAACATCCTCCTGCTCGGCCCCACGGGCTCCGGCAAGACCCTGCTGGCGCAGA
CCCTGGCCCGCATGCTCAACGTCCCCTTCGCCATCGCGGACGCCACCGCGCTCACCGAGGCGGGATACGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTCATCCAGGCCGCCGACTACGACGTCAAGAAGGCCGAGACGGGCATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACCCGCGATGTGAGCGGCGAGGGCGTCCAGCAGGCCC
TGCTGAAGATCCTGGAGGGCACCACCGCCTCGGTGCCGCCGCAGGGCGGACGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTGTTCATCGTGGGCGGTGCGTTCTCCGGCCTGGAGAAGATCATCGAGTCGCGGGCCGGCGC
GAAGGGCATCGGCTTCGGCGCCACCATCCGCTCCAAGCGCGAGCTGGCCGCCAAGGACATCTTCGAGGACATCATGCCCG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGTCTCCCGGTCATCACCTCGGTGCACAACCTCGACCGC
GAGGCCCTGCTCAAGATCCTCGTCGAGCCGCGCAACGCCCTGGTCAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAGCTGGACTTCGAGCGCGAGGCGCTGGAGGCCATCGCCGACCAGGCCATCCTCCGCCAGACCGGCGCGCGCGGCCTGC
GCGCCATCATGGAGGAGGTGCTGATGTCGGTGATGTACGAGGTGCCGTCCCGCAAGGACGTGGCCCGCGTCGTCATCACG
GCCGACGTCGTCCACTCCAACGTCAACCCGACCCTGATCCCGAGGGACTCCCGCGGCCGGGGCCAGGGCGAGCAGAAGAC
CGCGTAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.433	93.925	0.596
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.501	96.028	0.523