Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SMSK321_RS08415 Genome accession   NZ_AEDT01000026
Coordinates   10718..12697 (+) Length   659 a.a.
NCBI ID   WP_000749707.1    Uniprot ID   -
Organism   Streptococcus mitis SK321     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5718..17697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMSK321_RS08390 (SMSK321_1100) - 6115..6345 (+) 231 WP_000250395.1 DUF1146 family protein -
  SMSK321_RS08395 (SMSK321_1101) murA 6369..7652 (+) 1284 WP_000411905.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SMSK321_RS08400 (SMSK321_1102) - 7645..7833 (+) 189 WP_004241151.1 DNA-directed RNA polymerase subunit beta -
  SMSK321_RS08405 (SMSK321_1103) endA 7872..8696 (+) 825 WP_000359013.1 DNA-entry nuclease EndA Machinery gene
  SMSK321_RS08410 (SMSK321_1104) - 8964..10295 (+) 1332 WP_000390025.1 hemolysin family protein -
  SMSK321_RS08415 (SMSK321_1106) amiA 10718..12697 (+) 1980 WP_000749707.1 peptide ABC transporter substrate-binding protein Regulator
  SMSK321_RS08420 (SMSK321_1107) amiC 12764..14260 (+) 1497 WP_000759912.1 ABC transporter permease Regulator
  SMSK321_RS08425 (SMSK321_1108) amiD 14260..15186 (+) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  SMSK321_RS08430 (SMSK321_1109) amiE 15195..16262 (+) 1068 WP_000159549.1 ABC transporter ATP-binding protein Regulator
  SMSK321_RS08435 (SMSK321_1110) amiF 16273..17199 (+) 927 WP_001291303.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73105.24 Da        Isoelectric Point: 4.8521

>NTDB_id=64506 SMSK321_RS08415 WP_000749707.1 10718..12697(+) (amiA) [Streptococcus mitis SK321]
MKKSRVFVAAGVALFATGVLVACGNSKSSDSTAPKTYGYVYSADPETLDYLISGKESTKVATSNGIDGLFTNDKYGNLTP
AVAEDWSVSKDGLTYTYKIRKGVKWMTSDGEEYAEVTAKDFVNGLKHAADKKSEALYLAETSVKGLSDYLAGNSKDFSTV
GVKAVDDYTLEYTLNQPEPYWNSKMVYSIFWPLNEEFEKSKGSDFAKATDPTSLLYNGPFLLKGLTAKSSIEFAKNEQYW
DKENVHLDTATLAYFDGSDQESLERNFTSEAYSFARLYPTSSNFSKVEESYKDNIFYTPSGAGIGGLGVNIDRQNYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFDRTGYSAQVNGKEGAPLAVRNLFVKPDFVTAGEKTFGDLVAEKVKTYGDEWKD
VNFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDVPVDQTSKNFVARIQSFKQSVEKVLGEENVVIDIQQISKDE
FFNATYYAANAAAEDWDLSGAVGWNPDYEDPSTYLDILKSTNSEQTKTYMGYDDPSNAAAAKVGVKDYDKLLDEAGKETS
DLNKRYEKYAAAQAWLTDSSLFLPAMSSSGAAPFISRVVPFSASYSQSGDKGSNLYFKYIQLQDKVVTKADYEQAREKWL
KEKKESNEKVQKELTKHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=64506 SMSK321_RS08415 WP_000749707.1 10718..12697(+) (amiA) [Streptococcus mitis SK321]
ATGAAAAAAAGTAGAGTATTTGTTGCAGCAGGAGTTGCTTTGTTTGCGACGGGTGTGTTAGTGGCTTGTGGGAATTCAAA
ATCATCTGATTCGACAGCTCCAAAGACCTATGGCTATGTCTATTCAGCTGATCCAGAAACATTGGACTATCTTATCTCTG
GAAAAGAGAGTACGAAAGTGGCTACTTCAAACGGGATCGATGGCCTCTTCACAAATGACAAATACGGGAATTTGACTCCT
GCGGTTGCAGAAGACTGGTCTGTATCAAAAGACGGATTGACATATACCTACAAAATTCGTAAAGGTGTCAAATGGATGAC
ATCCGATGGTGAAGAATATGCCGAAGTGACTGCTAAAGACTTCGTGAATGGATTGAAACATGCGGCAGATAAGAAATCAG
AAGCTCTATATCTAGCTGAAACTTCTGTTAAAGGTTTATCTGATTATTTGGCTGGGAATTCAAAAGATTTCTCTACAGTA
GGTGTTAAAGCGGTTGATGACTATACTCTTGAGTATACTTTGAACCAACCAGAACCTTACTGGAACTCTAAGATGGTTTA
TTCAATTTTCTGGCCATTAAACGAAGAATTTGAAAAGTCAAAAGGCTCTGATTTTGCTAAAGCGACAGATCCTACATCAT
TGCTATATAATGGACCTTTCTTGCTCAAAGGTTTGACTGCTAAATCTTCTATCGAATTTGCTAAGAACGAGCAGTACTGG
GATAAAGAGAATGTTCATTTAGATACAGCAACACTTGCATATTTTGATGGTTCGGACCAAGAATCACTTGAACGTAACTT
TACAAGTGAAGCATACAGCTTTGCTCGACTATACCCAACAAGTTCAAACTTCTCAAAGGTAGAGGAGTCATACAAGGATA
ATATTTTCTACACTCCGTCAGGAGCTGGTATTGGAGGTTTAGGTGTAAATATTGATCGACAAAATTACAAATATACATCT
AAAACGACAGATGAAGAGAAAACATCTACTAAGAAAGCTCTTCTTAACAAAGACTTCCGCCAAGCCTTGAACTTTGCCTT
TGACCGTACAGGTTATTCTGCTCAAGTTAACGGTAAAGAAGGTGCTCCTCTCGCAGTTCGTAATTTATTTGTGAAACCAG
ACTTTGTGACTGCAGGCGAAAAAACTTTCGGTGACTTGGTTGCTGAAAAAGTTAAGACTTATGGAGATGAGTGGAAAGAT
GTAAACTTTGCTGATGGTCAAGACGGTCTCTTTAACGCTGACAAAGCTAAAGCAGAATTTGCTAAAGCTAAAACTGCTCT
GGAAGCAGAAGGTGTGAAATTCCCTATCCACTTGGATGTTCCAGTAGACCAAACCTCTAAAAACTTTGTCGCACGGATTC
AGTCGTTCAAACAATCAGTTGAAAAAGTTTTAGGCGAAGAAAATGTTGTCATCGATATTCAACAAATTTCTAAAGATGAA
TTCTTTAATGCGACTTATTATGCTGCTAATGCGGCAGCTGAGGATTGGGATCTTTCAGGTGCGGTTGGATGGAATCCTGA
CTATGAAGATCCATCAACTTACCTTGATATCCTTAAATCAACTAATAGTGAGCAAACGAAAACTTATATGGGGTATGATG
ACCCATCAAATGCAGCTGCAGCTAAAGTTGGTGTGAAAGATTACGATAAATTGCTTGATGAAGCTGGAAAAGAAACAAGT
GATCTTAACAAACGTTATGAAAAATATGCTGCTGCTCAAGCTTGGTTGACAGACAGTTCACTCTTCTTACCAGCTATGTC
TTCTAGTGGTGCTGCACCATTCATTTCTCGTGTTGTACCATTCTCAGCTTCTTATAGCCAATCTGGAGACAAAGGTTCAA
ATCTCTACTTCAAATATATTCAGTTACAAGACAAAGTTGTAACAAAGGCTGATTATGAACAAGCTCGTGAGAAATGGCTC
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGACTAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

67.982

100

0.68
  amiA3 Streptococcus thermophilus LMD-9

67.727

100

0.678
  amiA3 Streptococcus thermophilus LMG 18311

67.424

100

0.675

Multiple sequence alignment