Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   SMSK321_RS08420 Genome accession   NZ_AEDT01000026
Coordinates   12764..14260 (+) Length   498 a.a.
NCBI ID   WP_000759912.1    Uniprot ID   -
Organism   Streptococcus mitis SK321     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 7764..19260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMSK321_RS08405 (SMSK321_1103) endA 7872..8696 (+) 825 WP_000359013.1 DNA-entry nuclease EndA Machinery gene
  SMSK321_RS08410 (SMSK321_1104) - 8964..10295 (+) 1332 WP_000390025.1 hemolysin family protein -
  SMSK321_RS08415 (SMSK321_1106) amiA 10718..12697 (+) 1980 WP_000749707.1 peptide ABC transporter substrate-binding protein Regulator
  SMSK321_RS08420 (SMSK321_1107) amiC 12764..14260 (+) 1497 WP_000759912.1 ABC transporter permease Regulator
  SMSK321_RS08425 (SMSK321_1108) amiD 14260..15186 (+) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  SMSK321_RS08430 (SMSK321_1109) amiE 15195..16262 (+) 1068 WP_000159549.1 ABC transporter ATP-binding protein Regulator
  SMSK321_RS08435 (SMSK321_1110) amiF 16273..17199 (+) 927 WP_001291303.1 ATP-binding cassette domain-containing protein Regulator
  SMSK321_RS08440 (SMSK321_1111) - 17651..18529 (-) 879 WP_001049297.1 LysR family transcriptional regulator -
  SMSK321_RS0102495 (SMSK321_1112) - 18657..19007 (-) 351 WP_000208712.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55770.27 Da        Isoelectric Point: 9.3386

>NTDB_id=64507 SMSK321_RS08420 WP_000759912.1 12764..14260(+) (amiC) [Streptococcus mitis SK321]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTADKRDNYENTVYERMGYIEYYDTKELQEKAS
QIDASVTVEANDTNKAIYEKYIKQIGHGWTLGEFTESGQFYATREIPIFERVFHFYANLIDIDHTNKIQDPENPDLKRYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNINLGDSYPTYANSPVLQVITQGQGQTKTSQVQFPTGKKTSSV
NIYSRTYKSPSQADSREVANYGKDDPYTATESNYQYPSMIASSAVVGLIGLVISYAIAVPLGSAMARFKNTWIDSFSTGF
LTFLMALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPGTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLLLGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=64507 SMSK321_RS08420 WP_000759912.1 12764..14260(+) (amiC) [Streptococcus mitis SK321]
ATGAAGAAATATATTTTTATGCGTGTCTTGCGGTCATTGGTTTCTATCTTCTTAGTAACAACCTTGACTTACACGATTAT
CTATACAATGGTTCCTCGAAAATTGATTTTCAAACAGGATACCAACTATAACAAGATTGCGACAACTGCTGATAAACGTG
ATAACTATGAAAATACCGTTTATGAGCGTATGGGCTATATCGAGTACTACGATACCAAGGAATTGCAAGAGAAAGCTAGC
CAGATAGATGCCTCTGTAACAGTTGAAGCTAATGACACCAACAAGGCTATCTATGAAAAATACATCAAACAAATCGGTCA
TGGTTGGACCTTGGGAGAATTTACTGAAAGTGGCCAATTCTACGCTACTCGTGAAATCCCAATTTTTGAACGTGTTTTTC
ACTTCTATGCTAACTTGATTGACATTGACCATACTAATAAAATTCAAGACCCTGAAAATCCAGACTTGAAACGTTACCTT
CGTTTCGAAAATGATCCAGCTATCGGGTGGTCCTTGGTCGGCTCAGGAACAAAACACAAATATCTATTGTACTTCAACAG
TCAGTTCCCATTTGTGCATCAAAACTTTGTGAACATCAATTTAGGTGACTCTTATCCAACCTATGCTAATAGCCCTGTTT
TACAGGTTATTACTCAGGGACAAGGACAAACAAAAACATCTCAAGTTCAGTTCCCAACAGGTAAGAAAACTTCTTCTGTA
AATATTTACTCAAGAACCTATAAATCACCTAGTCAGGCTGATTCTCGTGAAGTAGCCAATTACGGAAAAGATGATCCTTA
TACAGCTACAGAAAGTAACTATCAATATCCTTCTATGATTGCTAGCTCTGCAGTCGTTGGATTGATTGGTTTGGTGATTT
CTTATGCTATTGCCGTGCCACTTGGTTCAGCTATGGCTCGCTTCAAGAACACATGGATTGATAGCTTCTCAACAGGGTTT
TTGACCTTCTTGATGGCCCTTCCAACCATTGCCTTGGTTTACATTGTTCGTTTGATTGGATCATCAATTGGTCTTCCAGA
TTCATTCCCTATTTTAGGTGCTGGAGATTGGCGTTCGTATGTTTTACCAGCAGTTATCCTTGGTTTGTTGGGTGCTCCTG
GTACAGCTATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAGGACTTTGTTCGTTTTGCTCGTGCAAAAGGTTTG
TCTGAAAAAGAAATTTCAAACAAACACATCTTTAAAAATGCCATGGTTCCGCTGGTTTCAGGAATTCCTGGTGCTGTTAT
CGGGGTTATCGGTGGTGCAACCCTTACTGAAACAGTCTTCGCTTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTGA
AAGCATCTAATAACTCTATGGTCGTAGGTCTTGTCTTCATCTTTACATGTATTTCTATCTTCTCACTTCTTTTGGGAGAT
ATTTGGATGACGATTATTGACCCACGTATTAAATTGACTGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.707

100

0.767
  amiC Streptococcus thermophilus LMG 18311

76.506

100

0.765
  amiC Streptococcus thermophilus LMD-9

76.104

100

0.761

Multiple sequence alignment